Difference between revisions of "TSS:Mm 10112.1"
From referenceTSS
| Line 3: | Line 3: | ||
|AA959793= | |AA959793= | ||
|AI132312= | |AI132312= | ||
| − | |all_trans=ENSMUST00000027965.10:0 NM_025626 | + | |all_trans=ENSMUST00000027965.10:0 NM_025626:0 AK032875:0 ENSMUST00000115053.8:4 ENSMUST00000177125.1:4 AK013932:19 AK168759:19 BC021353:29 AK019815:72 |
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| Line 12: | Line 12: | ||
|entrez_id=66540 | |entrez_id=66540 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
| − | |gene_alias=3110001A13Rik | + | |gene_alias=3110001A13Rik{{!}}AA589595{{!}}AA959793{{!}}AI132312 |
| − | |gene_description= | + | |gene_description=family with sequence similarity 107, member B |
|gene_id=66540 | |gene_id=66540 | ||
| − | |gene_name= | + | |gene_name=family with sequence similarity 107, member B |
|gene_source=MGI:1913790 | |gene_source=MGI:1913790 | ||
|gene_symbol=Fam107b | |gene_symbol=Fam107b | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_025626 | |nearest_refseq=NM_025626 | ||
|nearest_unigene=Mm.277864 | |nearest_unigene=Mm.277864 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=mouse | |species=mouse | ||
|start=3713449 | |start=3713449 | ||
|start_of_center_position=3713461 | |start_of_center_position=3713461 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000027965.10 NM_025626 | + | |transcript_name=ENSMUST00000027965.10 NM_025626 AK032875 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_10112.1 | |tss_id=mm_10112.1 | ||
Revision as of 16:33, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3713461 |
|---|---|
| End of the center position in the TSS region: | 3713462 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000027965.10 NM_025626 AK032875 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | ENSMUST00000027965.10:0 NM_025626:0 AK032875:0 ENSMUST00000115053.8:4 ENSMUST00000177125.1:4 AK013932:19 AK168759:19 BC021353:29 AK019815:72 |
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_025626 |
| Entrez ID: | 66540 |
| Nearest Unigene: | Mm.277864 |
| Nearest Refseq: | NM_025626 |
| Nearest Ensembl: | ENSMUSG00000026655 |
| Gene Name: | family with sequence similarity 107, member B |
| Gene Alias: | 3110001A13Rik|AA589595|AA959793|AI132312 |
| Gene Description: | family with sequence similarity 107, member B |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
