Difference between revisions of "TSS:Mm 101131.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=LF226320:-12 MA461897:-12 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=-12 |
|distance_to_tss=-16840 | |distance_to_tss=-16840 | ||
|end=12428991 | |end=12428991 | ||
| + | |end_of_center_position=12428981 | ||
|entrez_id=12808 | |entrez_id=12808 | ||
|gc_percent=0.472637 | |gc_percent=0.472637 | ||
| Line 15: | Line 17: | ||
|nearest_refseq=NM_172496 | |nearest_refseq=NM_172496 | ||
|nearest_unigene=Mm.22847 | |nearest_unigene=Mm.22847 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=mouse | |species=mouse | ||
|start=12428969 | |start=12428969 | ||
| + | |start_of_center_position=12428980 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-1(GTCTTTAAGTGG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=LF226320 MA461897 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_101131.1 | |tss_id=mm_101131.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:33, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 12428980 |
|---|---|
| End of the center position in the TSS region: | 12428981 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF226320 MA461897 |
|---|---|
| Distance: | -12 |
| Num_trans: | 2 |
| All_trans: | LF226320:-12 MA461897:-12 |
TATA-Box annotation
| Distance to TSS: | -16840 |
|---|---|
| Nearest PromoterID: | NM_001282994 |
| Entrez ID: | 12808 |
| Nearest Unigene: | Mm.22847 |
| Nearest Refseq: | NM_172496 |
| Nearest Ensembl: | ENSMUSG00000020173 |
| Gene Name: | Cobl |
| Gene Alias: | - |
| Gene Description: | cordon-bleu WH2 repeat |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.472637 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -1(GTCTTTAAGTGG,-,0.00) |
