Difference between revisions of "TSS:Mm 101132.1"
From referenceTSS
(Created page with "{{TSSDetail |chr=chr11 |cpg_percent=0.01 |distance= |distance_to_tss=-16882 |end=12429028 |entrez_id=12808 |gc_percent=0.462687 |gene_alias=- |gene_description=cordon-bleu WH2...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=LF226320:13 MA461897:13 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=13 |
|distance_to_tss=-16882 | |distance_to_tss=-16882 | ||
|end=12429028 | |end=12429028 | ||
| + | |end_of_center_position=12429022 | ||
|entrez_id=12808 | |entrez_id=12808 | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
| Line 15: | Line 17: | ||
|nearest_refseq=NM_172496 | |nearest_refseq=NM_172496 | ||
|nearest_unigene=Mm.22847 | |nearest_unigene=Mm.22847 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=mouse | |species=mouse | ||
|start=12429015 | |start=12429015 | ||
| + | |start_of_center_position=12429021 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-59(ATCTTTAAATGC,-,0.00),41(GTCTTTAAGTGG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=LF226320 MA461897 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_101132.1 | |tss_id=mm_101132.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:33, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 12429021 |
|---|---|
| End of the center position in the TSS region: | 12429022 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | LF226320 MA461897 |
|---|---|
| Distance: | 13 |
| Num_trans: | 2 |
| All_trans: | LF226320:13 MA461897:13 |
TATA-Box annotation
| Distance to TSS: | -16882 |
|---|---|
| Nearest PromoterID: | NM_001282994 |
| Entrez ID: | 12808 |
| Nearest Unigene: | Mm.22847 |
| Nearest Refseq: | NM_172496 |
| Nearest Ensembl: | ENSMUSG00000020173 |
| Gene Name: | Cobl |
| Gene Alias: | - |
| Gene Description: | cordon-bleu WH2 repeat |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -59(ATCTTTAAATGC,-,0.00),41(GTCTTTAAGTGG,-,0.00) |
