Difference between revisions of "TSS:Mm 101134.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000109650.7:-14 ENSMUST00000172919.7:16 AK028833:16 ENSMUST00000172956.7:20 AY308745:20 BC145116:20 BC145118:20 BC150706:20 ENSMUST00000130572.1:68 AK049730:68 AK147366:-111 AK147633:-111 ENSMUST00000046755.13:-112 ENSMUST00000109651.8 | + | |all_trans=ENSMUST00000109650.7:-14 ENSMUST00000172919.7:16 AK028833:16 ENSMUST00000172956.7:20 AY308745:20 BC145116:20 BC145118:20 BC150706:20 ENSMUST00000130572.1:68 AK049730:68 AK147366:-111 AK147633:-111 ENSMUST00000046755.13:-112 ENSMUST00000109651.8:-115 NM_001282993:-115 NM_172496:-115 LF198383:-116 MA433960:-116 LF226353:378 MA461930:378 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_172496 | |nearest_refseq=NM_172496 | ||
|nearest_unigene=Mm.22847 | |nearest_unigene=Mm.22847 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=mouse | |species=mouse | ||
|start=12464819 | |start=12464819 | ||
Revision as of 16:33, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 12464832 |
|---|---|
| End of the center position in the TSS region: | 12464833 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000109650.7 |
|---|---|
| Distance: | -14 |
| Num_trans: | 20 |
| All_trans: | ENSMUST00000109650.7:-14 ENSMUST00000172919.7:16 AK028833:16 ENSMUST00000172956.7:20 AY308745:20 BC145116:20 BC145118:20 BC150706:20 ENSMUST00000130572.1:68 AK049730:68 AK147366:-111 AK147633:-111 ENSMUST00000046755.13:-112 ENSMUST00000109651.8:-115 NM_001282993:-115 NM_172496:-115 LF198383:-116 MA433960:-116 LF226353:378 MA461930:378 |
TATA-Box annotation
| Distance to TSS: | 128 |
|---|---|
| Nearest PromoterID: | NM_172496 |
| Entrez ID: | 12808 |
| Nearest Unigene: | Mm.22847 |
| Nearest Refseq: | NM_172496 |
| Nearest Ensembl: | ENSMUSG00000020173 |
| Gene Name: | cordon-bleu WH2 repeat |
| Gene Alias: | - |
| Gene Description: | cordon-bleu WH2 repeat |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
