Difference between revisions of "TSS:Mm 101136.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000046755.13:0 ENSMUST00000109651.8 | + | |all_trans=ENSMUST00000046755.13:0 ENSMUST00000109651.8:0 NM_001282993:0 NM_172496:0 LF198383:0 MA433960:0 AK147366:0 AK147633:0 ENSMUST00000109650.7:23 ENSMUST00000172919.7:78 AK028833:78 ENSMUST00000172956.7:82 AY308745:82 BC145116:82 BC145118:82 BC150706:82 ENSMUST00000130572.1:130 AK049730:130 LF226353:440 MA461930:440 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.185 | |cpg_percent=0.185 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_172496 | |nearest_refseq=NM_172496 | ||
|nearest_unigene=Mm.22847 | |nearest_unigene=Mm.22847 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=mouse | |species=mouse | ||
|start=12464881 | |start=12464881 | ||
|start_of_center_position=12464939 | |start_of_center_position=12464939 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000046755.13 ENSMUST00000109651.8 NM_172496 | + | |transcript_name=ENSMUST00000046755.13 ENSMUST00000109651.8 NM_001282993 NM_172496 LF198383 MA433960 AK147366 AK147633 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101136.1 | |tss_id=mm_101136.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=G5E8P4 Q5NBX1 | + | |uniprot_id=G5E8P4 Q5NBX1 |
}} | }} | ||
Revision as of 16:33, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 12464939 |
|---|---|
| End of the center position in the TSS region: | 12464940 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000046755.13 ENSMUST00000109651.8 NM_001282993 NM_172496 LF198383 MA433960 AK147366 AK147633 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENSMUST00000046755.13:0 ENSMUST00000109651.8:0 NM_001282993:0 NM_172496:0 LF198383:0 MA433960:0 AK147366:0 AK147633:0 ENSMUST00000109650.7:23 ENSMUST00000172919.7:78 AK028833:78 ENSMUST00000172956.7:82 AY308745:82 BC145116:82 BC145118:82 BC150706:82 ENSMUST00000130572.1:130 AK049730:130 LF226353:440 MA461930:440 |
TATA-Box annotation
| Distance to TSS: | 21 |
|---|---|
| Nearest PromoterID: | NM_172496 |
| Entrez ID: | 12808 |
| Nearest Unigene: | Mm.22847 |
| Nearest Refseq: | NM_172496 |
| Nearest Ensembl: | ENSMUSG00000020173 |
| Gene Name: | cordon-bleu WH2 repeat |
| Gene Alias: | - |
| Gene Description: | cordon-bleu WH2 repeat |
| Gene Type: | protein-coding |
| CpG%: | 0.185 |
| GC%: | 0.830846 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
