Difference between revisions of "TSS:Mm 101143.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000138695.1:0 AK012393:0 AK160390:0 AK012644:-8 BC019129:-12 BC019158:-12 ENSMUST00000109642.7:-27 ENSMUST00000109641.1:30 ENSMUST00000109643.7:-345 ENSMUST00000166950.7:-345 ENSMUST00000178855.7:-345 NM_001109972:-345 NM_001109971:-345 NM_011343 | + | |all_trans=ENSMUST00000138695.1:0 AK012393:0 AK160390:0 AK012644:-8 BC019129:-12 BC019158:-12 ENSMUST00000109642.7:-27 ENSMUST00000109641.1:30 ENSMUST00000109643.7:-345 ENSMUST00000166950.7:-345 ENSMUST00000178855.7:-345 NM_001109972:-345 NM_001109971:-345 NM_011343:-345 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.572139 | |gc_percent=0.572139 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=SEC61, gamma subunit |
| − | |gene_id= | + | |gene_id=20335 |
| − | |gene_name= | + | |gene_name=SEC61, gamma subunit |
|gene_source=MGI:1202066 | |gene_source=MGI:1202066 | ||
|gene_symbol=Sec61g | |gene_symbol=Sec61g | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:1202066 | |hgnc_mgi_id=MGI:1202066 | ||
|nearest_ensembl=ENSMUSG00000078974 | |nearest_ensembl=ENSMUSG00000078974 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001109972 |
|nearest_refseq=NM_011343 | |nearest_refseq=NM_011343 | ||
|nearest_unigene=Mm.325350 | |nearest_unigene=Mm.325350 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=mouse | |species=mouse | ||
|start=16508098 | |start=16508098 | ||
| Line 31: | Line 31: | ||
|tss_id=mm_101143.1 | |tss_id=mm_101143.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q5SWJ8 |
}} | }} | ||
Revision as of 16:33, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 16508118 |
|---|---|
| End of the center position in the TSS region: | 16508119 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000138695.1 AK012393 AK160390 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | ENSMUST00000138695.1:0 AK012393:0 AK160390:0 AK012644:-8 BC019129:-12 BC019158:-12 ENSMUST00000109642.7:-27 ENSMUST00000109641.1:30 ENSMUST00000109643.7:-345 ENSMUST00000166950.7:-345 ENSMUST00000178855.7:-345 NM_001109972:-345 NM_001109971:-345 NM_011343:-345 |
TATA-Box annotation
| Distance to TSS: | 365 |
|---|---|
| Nearest PromoterID: | NM_001109972 |
| Entrez ID: | 20335 |
| Nearest Unigene: | Mm.325350 |
| Nearest Refseq: | NM_011343 |
| Nearest Ensembl: | ENSMUSG00000078974 |
| Gene Name: | SEC61, gamma subunit |
| Gene Alias: | - |
| Gene Description: | SEC61, gamma subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.572139 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
