Difference between revisions of "TSS:Mm 101144.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000109642.7:0 BC019129:0 BC019158:0 AK012644:3 ENSMUST00000138695.1:18 AK160390:26 AK012393:49 ENSMUST00000109641.1:81 ENSMUST00000109643.7:-297 ENSMUST00000166950.7:-297 ENSMUST00000178855.7:-297 NM_001109972:-297 NM_001109971:-297 NM_011343 | + | |all_trans=ENSMUST00000109642.7:0 BC019129:0 BC019158:0 AK012644:3 ENSMUST00000138695.1:18 AK160390:26 AK012393:49 ENSMUST00000109641.1:81 ENSMUST00000109643.7:-297 ENSMUST00000166950.7:-297 ENSMUST00000178855.7:-297 NM_001109972:-297 NM_001109971:-297 NM_011343:-297 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.567164 | |gc_percent=0.567164 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=SEC61, gamma subunit |
| − | |gene_id= | + | |gene_id=20335 |
| − | |gene_name= | + | |gene_name=SEC61, gamma subunit |
|gene_source=MGI:1202066 | |gene_source=MGI:1202066 | ||
|gene_symbol=Sec61g | |gene_symbol=Sec61g | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:1202066 | |hgnc_mgi_id=MGI:1202066 | ||
|nearest_ensembl=ENSMUSG00000078974 | |nearest_ensembl=ENSMUSG00000078974 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001109972 |
|nearest_refseq=NM_011343 | |nearest_refseq=NM_011343 | ||
|nearest_unigene=Mm.325350 | |nearest_unigene=Mm.325350 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=mouse | |species=mouse | ||
|start=16508149 | |start=16508149 | ||
Revision as of 16:33, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 16508168 |
|---|---|
| End of the center position in the TSS region: | 16508169 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000109642.7 BC019129 BC019158 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | ENSMUST00000109642.7:0 BC019129:0 BC019158:0 AK012644:3 ENSMUST00000138695.1:18 AK160390:26 AK012393:49 ENSMUST00000109641.1:81 ENSMUST00000109643.7:-297 ENSMUST00000166950.7:-297 ENSMUST00000178855.7:-297 NM_001109972:-297 NM_001109971:-297 NM_011343:-297 |
TATA-Box annotation
| Distance to TSS: | 316 |
|---|---|
| Nearest PromoterID: | NM_001109972 |
| Entrez ID: | 20335 |
| Nearest Unigene: | Mm.325350 |
| Nearest Refseq: | NM_011343 |
| Nearest Ensembl: | ENSMUSG00000078974 |
| Gene Name: | SEC61, gamma subunit |
| Gene Alias: | - |
| Gene Description: | SEC61, gamma subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
