Difference between revisions of "TSS:Mm 101154.1"
From referenceTSS
| Line 2: | Line 2: | ||
|4930500E12Rik= | |4930500E12Rik= | ||
|Fabl= | |Fabl= | ||
| − | |all_trans=ENSMUST00000130392.7:0 ENSMUST00000139493.7:0 ENSMUST00000129735.7:0 ENSMUST00000142777 | + | |all_trans=ENSMUST00000130392.7:0 ENSMUST00000139493.7:0 ENSMUST00000129735.7:0 ENSMUST00000142777.1:0 BC037766:0 AK013290:0 AK165613:0 AK141825:0 ENSMUST00000139271.1:2 BC054406:41 ENSMUST00000123734.7:42 ENSMUST00000136053.7:-151 NR_110423:-151 NR_110422:-151 NR_110421:-151 NR_110425:-151 NR_110424:-151 AK015657:-151 KY467568:-151 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| Line 11: | Line 11: | ||
|entrez_id=72735 | |entrez_id=72735 | ||
|gc_percent=0.587065 | |gc_percent=0.587065 | ||
| − | |gene_alias=2810442I21Rik | + | |gene_alias=2810442I21Rik{{!}}4930500E12Rik{{!}}Fabl |
|gene_description=Egfr long non-coding downstream RNA | |gene_description=Egfr long non-coding downstream RNA | ||
|gene_id=72735 | |gene_id=72735 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NR_015469 | |nearest_refseq=NR_015469 | ||
|nearest_unigene=Mm.268598 | |nearest_unigene=Mm.268598 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=mouse | |species=mouse | ||
|start=16951083 | |start=16951083 | ||
|start_of_center_position=16951107 | |start_of_center_position=16951107 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-91(GGACTTAAAAGA,-,0.00) |
| − | |transcript_name=ENSMUST00000130392.7 ENSMUST00000139493.7 ENSMUST00000129735.7 ENSMUST00000142777 | + | |transcript_name=ENSMUST00000130392.7 ENSMUST00000139493.7 ENSMUST00000129735.7 ENSMUST00000142777.1 BC037766 AK013290 AK165613 AK141825 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101154.1 | |tss_id=mm_101154.1 | ||
Revision as of 16:34, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 16951107 |
|---|---|
| End of the center position in the TSS region: | 16951108 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000130392.7 ENSMUST00000139493.7 ENSMUST00000129735.7 ENSMUST00000142777.1 BC037766 AK013290 AK165613 AK141825 |
|---|---|
| Distance: | 0 |
| Num_trans: | 19 |
| All_trans: | ENSMUST00000130392.7:0 ENSMUST00000139493.7:0 ENSMUST00000129735.7:0 ENSMUST00000142777.1:0 BC037766:0 AK013290:0 AK165613:0 AK141825:0 ENSMUST00000139271.1:2 BC054406:41 ENSMUST00000123734.7:42 ENSMUST00000136053.7:-151 NR_110423:-151 NR_110422:-151 NR_110421:-151 NR_110425:-151 NR_110424:-151 AK015657:-151 KY467568:-151 |
TATA-Box annotation
| Distance to TSS: | 175 |
|---|---|
| Nearest PromoterID: | NR_110421 |
| Entrez ID: | 72735 |
| Nearest Unigene: | Mm.268598 |
| Nearest Refseq: | NR_015469 |
| Nearest Ensembl: | |
| Gene Name: | Egfr long non-coding downstream RNA |
| Gene Alias: | 2810442I21Rik|4930500E12Rik|Fabl |
| Gene Description: | Egfr long non-coding downstream RNA |
| Gene Type: | ncRNA |
| CpG%: | 0.05 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -91(GGACTTAAAAGA,-,0.00) |
