Difference between revisions of "TSS:Mm 10117.1"
From referenceTSS
(Created page with "{{TSSDetail |chr=chr2 |cpg_percent=0 |distance= |distance_to_tss=13722 |end=3727185 |entrez_id=66540 |gc_percent=0.373134 |gene_alias=3110001A13Rik|AA589595|AA959793|AI132312...") |
|||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |AA589595= | ||
| + | |AA959793= | ||
| + | |AI132312= | ||
| + | |all_trans=LF258754:-342 MA494331:-342 | ||
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=-342 |
|distance_to_tss=13722 | |distance_to_tss=13722 | ||
|end=3727185 | |end=3727185 | ||
| + | |end_of_center_position=3727180 | ||
|entrez_id=66540 | |entrez_id=66540 | ||
|gc_percent=0.373134 | |gc_percent=0.373134 | ||
| − | |gene_alias=3110001A13Rik | + | |gene_alias=3110001A13Rik{{!}}AA589595{{!}}AA959793{{!}}AI132312 |
| − | |gene_description= | + | |gene_description=family with sequence similarity 107, member B |
|gene_name=Fam107b | |gene_name=Fam107b | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 15: | Line 20: | ||
|nearest_refseq=NM_025626 | |nearest_refseq=NM_025626 | ||
|nearest_unigene=Mm.277864 | |nearest_unigene=Mm.277864 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=mouse | |species=mouse | ||
|start=3727174 | |start=3727174 | ||
| + | |start_of_center_position=3727179 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-86(CTTTTTAAATGG,+,0.00) |
| − | |transcript_name= | + | |transcript_name=LF258754 MA494331 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_10117.1 | |tss_id=mm_10117.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:34, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3727179 |
|---|---|
| End of the center position in the TSS region: | 3727180 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF258754 MA494331 |
|---|---|
| Distance: | -342 |
| Num_trans: | 2 |
| All_trans: | LF258754:-342 MA494331:-342 |
TATA-Box annotation
| Distance to TSS: | 13722 |
|---|---|
| Nearest PromoterID: | NM_025626 |
| Entrez ID: | 66540 |
| Nearest Unigene: | Mm.277864 |
| Nearest Refseq: | NM_025626 |
| Nearest Ensembl: | ENSMUSG00000026655 |
| Gene Name: | Fam107b |
| Gene Alias: | 3110001A13Rik|AA589595|AA959793|AI132312 |
| Gene Description: | family with sequence similarity 107, member B |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.373134 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -86(CTTTTTAAATGG,+,0.00) |
