Difference between revisions of "TSS:Mm 10118.1"
From referenceTSS
| Line 3: | Line 3: | ||
|AA959793= | |AA959793= | ||
|AI132312= | |AI132312= | ||
| + | |all_trans=LF258757:-487 MA494334:-487 | ||
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=-487 |
|distance_to_tss=17519 | |distance_to_tss=17519 | ||
|end=3730996 | |end=3730996 | ||
| Line 11: | Line 12: | ||
|entrez_id=66540 | |entrez_id=66540 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
| − | |gene_alias=3110001A13Rik | + | |gene_alias=3110001A13Rik{{!}}AA589595{{!}}AA959793{{!}}AI132312 |
| − | |gene_description= | + | |gene_description=family with sequence similarity 107, member B |
|gene_name=Fam107b | |gene_name=Fam107b | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 19: | Line 20: | ||
|nearest_refseq=NM_025626 | |nearest_refseq=NM_025626 | ||
|nearest_unigene=Mm.277864 | |nearest_unigene=Mm.277864 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=mouse | |species=mouse | ||
|start=3730957 | |start=3730957 | ||
|start_of_center_position=3730976 | |start_of_center_position=3730976 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=54(TCCTTTATAAGG,-,0.00),56(CTTTATAAGGCG,+,0.00) |
| − | |transcript_name= | + | |transcript_name=LF258757 MA494334 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_10118.1 | |tss_id=mm_10118.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:34, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3730976 |
|---|---|
| End of the center position in the TSS region: | 3730977 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF258757 MA494334 |
|---|---|
| Distance: | -487 |
| Num_trans: | 2 |
| All_trans: | LF258757:-487 MA494334:-487 |
TATA-Box annotation
| Distance to TSS: | 17519 |
|---|---|
| Nearest PromoterID: | NM_025626 |
| Entrez ID: | 66540 |
| Nearest Unigene: | Mm.277864 |
| Nearest Refseq: | NM_025626 |
| Nearest Ensembl: | ENSMUSG00000026655 |
| Gene Name: | Fam107b |
| Gene Alias: | 3110001A13Rik|AA589595|AA959793|AI132312 |
| Gene Description: | family with sequence similarity 107, member B |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 54(TCCTTTATAAGG,-,0.00),56(CTTTATAAGGCG,+,0.00) |
