Difference between revisions of "TSS:Mm 101200.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|Evi8= | |Evi8= | ||
| − | |all_trans=U33629:-180 U33630:-180 AB221660:200 ENSMUST00000102878.10:-228 ENSMUST00000177417.7:-228 AK132298:-263 ENSMUST00000125722.7:-436 ENSMUST00000137300.1:-436 AK049720:-436 AK032947:-436 ENSMUST00000068264.13:-472 BC023689:-472 AK168684:-475 AK134321:-480 ENSMUST00000185131.7 | + | |all_trans=U33629:-180 U33630:-180 AB221660:200 ENSMUST00000102878.10:-228 ENSMUST00000177417.7:-228 AK132298:-263 ENSMUST00000125722.7:-436 ENSMUST00000137300.1:-436 AK049720:-436 AK032947:-436 ENSMUST00000068264.13:-472 BC023689:-472 AK168684:-475 AK134321:-480 ENSMUST00000185131.7:-483 NM_010789:-483 NM_001193271:-483 AK140748:-483 ENSMUST00000144988.7:-499 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| Line 10: | Line 10: | ||
|entrez_id=17268 | |entrez_id=17268 | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
| − | |gene_alias=C530044H18Rik | + | |gene_alias=C530044H18Rik{{!}}Evi8 |
|gene_description=Meis homeobox 1 | |gene_description=Meis homeobox 1 | ||
|gene_id=17268 | |gene_id=17268 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_010789 | |nearest_refseq=NM_010789 | ||
|nearest_unigene=Mm.356578 | |nearest_unigene=Mm.356578 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=mouse | |species=mouse | ||
|start=19018431 | |start=19018431 | ||
|start_of_center_position=19018458 | |start_of_center_position=19018458 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=10(GCTTTTATGCTC,+,0.00) |
|transcript_name=U33629 U33630 | |transcript_name=U33629 U33630 | ||
|tss_classification=no | |tss_classification=no | ||
Revision as of 16:35, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 19018458 |
|---|---|
| End of the center position in the TSS region: | 19018459 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | U33629 U33630 |
|---|---|
| Distance: | -180 |
| Num_trans: | 19 |
| All_trans: | U33629:-180 U33630:-180 AB221660:200 ENSMUST00000102878.10:-228 ENSMUST00000177417.7:-228 AK132298:-263 ENSMUST00000125722.7:-436 ENSMUST00000137300.1:-436 AK049720:-436 AK032947:-436 ENSMUST00000068264.13:-472 BC023689:-472 AK168684:-475 AK134321:-480 ENSMUST00000185131.7:-483 NM_010789:-483 NM_001193271:-483 AK140748:-483 ENSMUST00000144988.7:-499 |
TATA-Box annotation
| Distance to TSS: | 510 |
|---|---|
| Nearest PromoterID: | NM_001193271 |
| Entrez ID: | 17268 |
| Nearest Unigene: | Mm.356578 |
| Nearest Refseq: | NM_010789 |
| Nearest Ensembl: | ENSMUSG00000020160 |
| Gene Name: | Meis homeobox 1 |
| Gene Alias: | C530044H18Rik|Evi8 |
| Gene Description: | Meis homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 10(GCTTTTATGCTC,+,0.00) |
