Difference between revisions of "TSS:Mm 101202.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|Evi8= | |Evi8= | ||
| − | |all_trans=ENSMUST00000125722.7:0 ENSMUST00000137300.1:0 AK049720:0 AK032947:0 ENSMUST00000068264.13:-17 BC023689:-17 AK168684:-20 AK134321:-25 ENSMUST00000185131.7 | + | |all_trans=ENSMUST00000125722.7:0 ENSMUST00000137300.1:0 AK049720:0 AK032947:0 ENSMUST00000068264.13:-17 BC023689:-17 AK168684:-20 AK134321:-25 ENSMUST00000185131.7:-28 NM_010789:-28 NM_001193271:-28 AK140748:-28 ENSMUST00000144988.7:-44 AK132298:166 ENSMUST00000102878.10:201 ENSMUST00000177417.7:201 U33629:249 U33630:249 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| Line 10: | Line 10: | ||
|entrez_id=17268 | |entrez_id=17268 | ||
|gc_percent=0.522388 | |gc_percent=0.522388 | ||
| − | |gene_alias=C530044H18Rik | + | |gene_alias=C530044H18Rik{{!}}Evi8 |
|gene_description=Meis homeobox 1 | |gene_description=Meis homeobox 1 | ||
|gene_id=17268 | |gene_id=17268 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_010789 | |nearest_refseq=NM_010789 | ||
|nearest_unigene=Mm.356578 | |nearest_unigene=Mm.356578 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=mouse | |species=mouse | ||
|start=19018914 | |start=19018914 | ||
|start_of_center_position=19018927 | |start_of_center_position=19018927 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=49(CCTTTAAGACAA,+,0.00) |
|transcript_name=ENSMUST00000125722.7 ENSMUST00000137300.1 AK049720 AK032947 | |transcript_name=ENSMUST00000125722.7 ENSMUST00000137300.1 AK049720 AK032947 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 16:35, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 19018927 |
|---|---|
| End of the center position in the TSS region: | 19018928 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000125722.7 ENSMUST00000137300.1 AK049720 AK032947 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENSMUST00000125722.7:0 ENSMUST00000137300.1:0 AK049720:0 AK032947:0 ENSMUST00000068264.13:-17 BC023689:-17 AK168684:-20 AK134321:-25 ENSMUST00000185131.7:-28 NM_010789:-28 NM_001193271:-28 AK140748:-28 ENSMUST00000144988.7:-44 AK132298:166 ENSMUST00000102878.10:201 ENSMUST00000177417.7:201 U33629:249 U33630:249 |
TATA-Box annotation
| Distance to TSS: | 41 |
|---|---|
| Nearest PromoterID: | NM_001193271 |
| Entrez ID: | 17268 |
| Nearest Unigene: | Mm.356578 |
| Nearest Refseq: | NM_010789 |
| Nearest Ensembl: | ENSMUSG00000020160 |
| Gene Name: | Meis homeobox 1 |
| Gene Alias: | C530044H18Rik|Evi8 |
| Gene Description: | Meis homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.522388 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 49(CCTTTAAGACAA,+,0.00) |
