Difference between revisions of "TSS:Mm 101211.1"
From referenceTSS
| Line 3: | Line 3: | ||
|Arp2= | |Arp2= | ||
|D6Ertd746e= | |D6Ertd746e= | ||
| + | |all_trans=LF226382:236 MA461959:236 LF226381:358 MA461958:358 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=236 |
|distance_to_tss=48702 | |distance_to_tss=48702 | ||
|end=20064265 | |end=20064265 | ||
| Line 11: | Line 12: | ||
|entrez_id=66713 | |entrez_id=66713 | ||
|gc_percent=0.482587 | |gc_percent=0.482587 | ||
| − | |gene_alias=4921510D23Rik | + | |gene_alias=4921510D23Rik{{!}}AA409782{{!}}Arp2{{!}}D6Ertd746e |
|gene_description=ARP2 actin-related protein 2 | |gene_description=ARP2 actin-related protein 2 | ||
|gene_name=Actr2 | |gene_name=Actr2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSMUSG00000020152 | |nearest_ensembl=ENSMUSG00000020152 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001362899 |
|nearest_refseq=NM_146243 | |nearest_refseq=NM_146243 | ||
|nearest_unigene=Mm.259045 | |nearest_unigene=Mm.259045 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=mouse | |species=mouse | ||
|start=20064233 | |start=20064233 | ||
|start_of_center_position=20064249 | |start_of_center_position=20064249 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF226382 MA461959 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_101211.1 | |tss_id=mm_101211.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:35, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 20064249 |
|---|---|
| End of the center position in the TSS region: | 20064250 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF226382 MA461959 |
|---|---|
| Distance: | 236 |
| Num_trans: | 4 |
| All_trans: | LF226382:236 MA461959:236 LF226381:358 MA461958:358 |
TATA-Box annotation
| Distance to TSS: | 48702 |
|---|---|
| Nearest PromoterID: | NM_001362899 |
| Entrez ID: | 66713 |
| Nearest Unigene: | Mm.259045 |
| Nearest Refseq: | NM_146243 |
| Nearest Ensembl: | ENSMUSG00000020152 |
| Gene Name: | Actr2 |
| Gene Alias: | 4921510D23Rik|AA409782|Arp2|D6Ertd746e |
| Gene Description: | ARP2 actin-related protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.482587 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
