Difference between revisions of "TSS:Mm 101220.1"
From referenceTSS
| Line 5: | Line 5: | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=-40772 | |distance_to_tss=-40772 | ||
|end=20153745 | |end=20153745 | ||
| Line 11: | Line 11: | ||
|entrez_id=66713 | |entrez_id=66713 | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
| − | |gene_alias=4921510D23Rik | + | |gene_alias=4921510D23Rik{{!}}AA409782{{!}}Arp2{{!}}D6Ertd746e |
|gene_description=ARP2 actin-related protein 2 | |gene_description=ARP2 actin-related protein 2 | ||
|gene_name=Actr2 | |gene_name=Actr2 | ||
| Line 24: | Line 24: | ||
|start_of_center_position=20153722 | |start_of_center_position=20153722 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-88(CCCCTTTAAAAG,-,0.00),-87(CCCTTTAAAAGT,-,0.00),-86(CCTTTAAAAGTG,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 16:35, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 20153722 |
|---|---|
| End of the center position in the TSS region: | 20153723 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -40772 |
|---|---|
| Nearest PromoterID: | NM_146243 |
| Entrez ID: | 66713 |
| Nearest Unigene: | Mm.259045 |
| Nearest Refseq: | NM_146243 |
| Nearest Ensembl: | ENSMUSG00000020152 |
| Gene Name: | Actr2 |
| Gene Alias: | 4921510D23Rik|AA409782|Arp2|D6Ertd746e |
| Gene Description: | ARP2 actin-related protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -88(CCCCTTTAAAAG,-,0.00),-87(CCCTTTAAAAGT,-,0.00),-86(CCTTTAAAAGTG,+,0.00) |
