Difference between revisions of "TSS:Mm 101226.1"
From referenceTSS
| Line 3: | Line 3: | ||
|BC027174= | |BC027174= | ||
|Kiaa0582= | |Kiaa0582= | ||
| − | |all_trans=ENSMUST00000050611.13:0 ENSMUST00000109596.7:0 ENSMUST00000162811.1:0 ENSMUST00000161218.1:0 NM_172260 | + | |all_trans=ENSMUST00000050611.13:0 ENSMUST00000109596.7:0 ENSMUST00000162811.1:0 ENSMUST00000161218.1:0 NM_172260:0 AK140820:0 AK031622:0 BC027174:0 AK146669:0 AK145286:0 AK169934:0 AK162594:0 AK172304:0 BC059935:0 AK172975:6 AK205251:41 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| Line 12: | Line 12: | ||
|entrez_id=216543 | |entrez_id=216543 | ||
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
| − | |gene_alias=6030463E10Rik | + | |gene_alias=6030463E10Rik{{!}}AI481761{{!}}BC027174{{!}}Kiaa0582 |
|gene_description=centrosomal protein 68 | |gene_description=centrosomal protein 68 | ||
|gene_id=216543 | |gene_id=216543 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_172260 | |nearest_refseq=NM_172260 | ||
|nearest_unigene=Mm.260314 | |nearest_unigene=Mm.260314 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=mouse | |species=mouse | ||
|start=20249360 | |start=20249360 | ||
|start_of_center_position=20249396 | |start_of_center_position=20249396 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000050611.13 ENSMUST00000109596.7 ENSMUST00000162811.1 ENSMUST00000161218.1 NM_172260 | + | |transcript_name=ENSMUST00000050611.13 ENSMUST00000109596.7 ENSMUST00000162811.1 ENSMUST00000161218.1 NM_172260 AK140820 AK031622 BC027174 AK146669 AK145286 AK169934 AK162594 AK172304 BC059935 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101226.1 | |tss_id=mm_101226.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q3T9T3 Q3TRP8 Q3ULV4 Q8C0D9 | + | |uniprot_id=Q3T9T3 Q3TRP8 Q3ULV4 Q8C0D9 |
}} | }} | ||
Revision as of 16:35, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 20249396 |
|---|---|
| End of the center position in the TSS region: | 20249397 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000050611.13 ENSMUST00000109596.7 ENSMUST00000162811.1 ENSMUST00000161218.1 NM_172260 AK140820 AK031622 BC027174 AK146669 AK145286 AK169934 AK162594 AK172304 BC059935 |
|---|---|
| Distance: | 0 |
| Num_trans: | 16 |
| All_trans: | ENSMUST00000050611.13:0 ENSMUST00000109596.7:0 ENSMUST00000162811.1:0 ENSMUST00000161218.1:0 NM_172260:0 AK140820:0 AK031622:0 BC027174:0 AK146669:0 AK145286:0 AK169934:0 AK162594:0 AK172304:0 BC059935:0 AK172975:6 AK205251:41 |
TATA-Box annotation
| Distance to TSS: | 27 |
|---|---|
| Nearest PromoterID: | NM_172260 |
| Entrez ID: | 216543 |
| Nearest Unigene: | Mm.260314 |
| Nearest Refseq: | NM_172260 |
| Nearest Ensembl: | ENSMUSG00000044066 |
| Gene Name: | centrosomal protein 68 |
| Gene Alias: | 6030463E10Rik|AI481761|BC027174|Kiaa0582 |
| Gene Description: | centrosomal protein 68 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
