Difference between revisions of "TSS:Mm 101251.1"
From referenceTSS
| Line 2: | Line 2: | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=-29199 | |distance_to_tss=-29199 | ||
|end=20770757 | |end=20770757 | ||
| Line 13: | Line 13: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSMUSG00000049659 | |nearest_ensembl=ENSMUSG00000049659 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001252503 |
|nearest_refseq=NM_181411 | |nearest_refseq=NM_181411 | ||
|nearest_unigene=Mm.356580 | |nearest_unigene=Mm.356580 | ||
| Line 21: | Line 21: | ||
|start_of_center_position=20770755 | |start_of_center_position=20770755 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-95(TCCTTAATAGTC,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 16:36, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 20770755 |
|---|---|
| End of the center position in the TSS region: | 20770756 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -29199 |
|---|---|
| Nearest PromoterID: | NM_001252503 |
| Entrez ID: | 216549 |
| Nearest Unigene: | Mm.356580 |
| Nearest Refseq: | NM_181411 |
| Nearest Ensembl: | ENSMUSG00000049659 |
| Gene Name: | Aftph |
| Gene Alias: | - |
| Gene Description: | aftiphilin |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.472637 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -95(TCCTTAATAGTC,+,0.00) |
