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Difference between revisions of "TSS:Mm 101253.1"

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Line 4: Line 4:
 
|Hspc159=
 
|Hspc159=
 
|Lgalsla=
 
|Lgalsla=
|all_trans=BC019131:4 ENSMUST00000047028.8:5 ENSMUST00000154300.7:5 AK167557:21 NM_173752:-34 uc007idj.2:-34 ENSMUST00000132928.1:39 AK041053:39 AK156350:-162 ENSMUST00000144441.7:306
+
|all_trans=BC019131:4 ENSMUST00000047028.8:5 ENSMUST00000154300.7:5 AK167557:21 NM_173752:-34 ENSMUST00000132928.1:39 AK041053:39 AK156350:-162 ENSMUST00000144441.7:306
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.185
 
|cpg_percent=0.185
Line 13: Line 13:
 
|entrez_id=216551
 
|entrez_id=216551
 
|gc_percent=0.80597
 
|gc_percent=0.80597
|gene_alias=1110067D22Rik
+
|gene_alias=1110067D22Rik{{!}}A530071M23{{!}}Grpa{{!}}Hspc159{{!}}Lgalsla
|gene_description="lectin, galactoside binding-like"
+
|gene_description=lectin, galactoside binding-like
 
|gene_id=216551
 
|gene_id=216551
|gene_name="lectin, galactoside binding-like"
+
|gene_name=lectin, galactoside binding-like
 
|gene_source=MGI:1916114
 
|gene_source=MGI:1916114
 
|gene_symbol=Lgalsl
 
|gene_symbol=Lgalsl
Line 26: Line 26:
 
|nearest_refseq=NM_173752
 
|nearest_refseq=NM_173752
 
|nearest_unigene=Mm.76694
 
|nearest_unigene=Mm.76694
|num_trans=10
+
|num_trans=9
 
|species=mouse
 
|species=mouse
 
|start=20831060
 
|start=20831060

Revision as of 16:36, 19 June 2021

Basic information about the TSS


TSS ID:mm_101253.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:20831060
End:20831074
Strand:-
TSS Score:1
Start of the center position in the TSS region:20831067
End of the center position in the TSS region:20831068



Gene and protein annotation


Transcript_name:BC019131
Distance:4
GeneID:216551
HGNC/MGI_ID:MGI:1916114
UniProt_ID:
Gene_name:lectin, galactoside binding-like
Gene_symbol:Lgalsl
Gene_synonyms:1110067D22Rik
Gene_source:MGI:1916114



Transcript annotation


Transcript_name:BC019131
Distance:4
Num_trans:9
All_trans:BC019131:4 ENSMUST00000047028.8:5 ENSMUST00000154300.7:5 AK167557:21 NM_173752:-34 ENSMUST00000132928.1:39 AK041053:39 AK156350:-162 ENSMUST00000144441.7:306



TATA-Box annotation


Distance to TSS:41
Nearest PromoterID:NM_173752
Entrez ID:216551
Nearest Unigene:Mm.76694
Nearest Refseq:NM_173752
Nearest Ensembl:ENSMUSG00000042363
Gene Name:lectin, galactoside binding-like
Gene Alias:1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla
Gene Description:lectin, galactoside binding-like
Gene Type:protein-coding
CpG%:0.185
GC%:0.80597
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):