Difference between revisions of "TSS:Mm 101254.1"
From referenceTSS
| Line 4: | Line 4: | ||
|Hspc159= | |Hspc159= | ||
|Lgalsla= | |Lgalsla= | ||
| − | |all_trans=AK156350:-47 NM_173752 | + | |all_trans=AK156350:-47 NM_173752:66 BC019131:117 ENSMUST00000047028.8:118 ENSMUST00000154300.7:118 AK167557:134 ENSMUST00000132928.1:152 AK041053:152 ENSMUST00000144441.7:419 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
| Line 13: | Line 13: | ||
|entrez_id=216551 | |entrez_id=216551 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
| − | |gene_alias=1110067D22Rik | + | |gene_alias=1110067D22Rik{{!}}A530071M23{{!}}Grpa{{!}}Hspc159{{!}}Lgalsla |
| − | |gene_description= | + | |gene_description=lectin, galactoside binding-like |
|gene_id=216551 | |gene_id=216551 | ||
| − | |gene_name= | + | |gene_name=lectin, galactoside binding-like |
|gene_source=MGI:1916114 | |gene_source=MGI:1916114 | ||
|gene_symbol=Lgalsl | |gene_symbol=Lgalsl | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_173752 | |nearest_refseq=NM_173752 | ||
|nearest_unigene=Mm.76694 | |nearest_unigene=Mm.76694 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=mouse | |species=mouse | ||
|start=20831173 | |start=20831173 | ||
|start_of_center_position=20831181 | |start_of_center_position=20831181 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-33(GCCTTTAAATGC,+,0.00),-33(GCCTTTAAATGC,-,0.00) |
|transcript_name=AK156350 | |transcript_name=AK156350 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 16:36, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 20831181 |
|---|---|
| End of the center position in the TSS region: | 20831182 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK156350 |
|---|---|
| Distance: | -47 |
| Num_trans: | 9 |
| All_trans: | AK156350:-47 NM_173752:66 BC019131:117 ENSMUST00000047028.8:118 ENSMUST00000154300.7:118 AK167557:134 ENSMUST00000132928.1:152 AK041053:152 ENSMUST00000144441.7:419 |
TATA-Box annotation
| Distance to TSS: | -73 |
|---|---|
| Nearest PromoterID: | NM_173752 |
| Entrez ID: | 216551 |
| Nearest Unigene: | Mm.76694 |
| Nearest Refseq: | NM_173752 |
| Nearest Ensembl: | ENSMUSG00000042363 |
| Gene Name: | lectin, galactoside binding-like |
| Gene Alias: | 1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla |
| Gene Description: | lectin, galactoside binding-like |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(GCCTTTAAATGC,+,0.00),-33(GCCTTTAAATGC,-,0.00) |
