Difference between revisions of "TSS:Mm 101267.1"
From referenceTSS
(Created page with "{{TSSDetail |chr=chr11 |cpg_percent=0.09 |distance= |distance_to_tss=507 |end=21239548 |entrez_id=245944 |gc_percent=0.711443 |gene_alias=Hcc8|Vps54l|mSLP8|wr |gene_descriptio...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |Vps54l= | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=507 | |distance_to_tss=507 | ||
|end=21239548 | |end=21239548 | ||
| + | |end_of_center_position=21239540 | ||
|entrez_id=245944 | |entrez_id=245944 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
| − | |gene_alias=Hcc8 | + | |gene_alias=Hcc8{{!}}Vps54l{{!}}mSLP8{{!}}wr |
|gene_description=VPS54 GARP complex subunit | |gene_description=VPS54 GARP complex subunit | ||
|gene_name=Vps54 | |gene_name=Vps54 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |mSLP8= | ||
|nearest_ensembl=ENSMUSG00000020128 | |nearest_ensembl=ENSMUSG00000020128 | ||
|nearest_promoter_id=NM_001290628 | |nearest_promoter_id=NM_001290628 | ||
| Line 18: | Line 21: | ||
|species=mouse | |species=mouse | ||
|start=21239530 | |start=21239530 | ||
| + | |start_of_center_position=21239539 | ||
|strand=- | |strand=- | ||
|transcript_name= | |transcript_name= | ||
| Line 23: | Line 27: | ||
|tss_id=mm_101267.1 | |tss_id=mm_101267.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |wr= | ||
}} | }} | ||
Latest revision as of 16:36, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 21239539 |
|---|---|
| End of the center position in the TSS region: | 21239540 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 507 |
|---|---|
| Nearest PromoterID: | NM_001290628 |
| Entrez ID: | 245944 |
| Nearest Unigene: | Mm.170103 |
| Nearest Refseq: | NM_139061 |
| Nearest Ensembl: | ENSMUSG00000020128 |
| Gene Name: | Vps54 |
| Gene Alias: | Hcc8|Vps54l|mSLP8|wr |
| Gene Description: | VPS54 GARP complex subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
