Difference between revisions of "TSS:Mm 101272.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|UGPase= | |UGPase= | ||
| − | |all_trans=NM_139297 | + | |all_trans=NM_139297:19 AK185393:123 BC061208:135 AK209798:168 AK196595:169 AK197624:169 ENSMUST00000102875.10:171 AF424698:171 AK033445:173 AK177085:388 AK214438:388 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| Line 10: | Line 10: | ||
|entrez_id=216558 | |entrez_id=216558 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
| − | |gene_alias=UDPGP | + | |gene_alias=UDPGP{{!}}UGPase |
|gene_description=UDP-glucose pyrophosphorylase 2 | |gene_description=UDP-glucose pyrophosphorylase 2 | ||
|gene_id=216558 | |gene_id=216558 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_139297 | |nearest_refseq=NM_139297 | ||
|nearest_unigene=Mm.28877 | |nearest_unigene=Mm.28877 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=mouse | |species=mouse | ||
|start=21370647 | |start=21370647 | ||
|start_of_center_position=21370651 | |start_of_center_position=21370651 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-64(GGCTATTTATGG,-,0.00),-62(CTATTTATGGGC,+,0.00) |
| − | |transcript_name=NM_139297 | + | |transcript_name=NM_139297 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101272.1 | |tss_id=mm_101272.1 | ||
Revision as of 16:36, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 21370651 |
|---|---|
| End of the center position in the TSS region: | 21370652 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_139297 |
|---|---|
| Distance: | 19 |
| Num_trans: | 11 |
| All_trans: | NM_139297:19 AK185393:123 BC061208:135 AK209798:168 AK196595:169 AK197624:169 ENSMUST00000102875.10:171 AF424698:171 AK033445:173 AK177085:388 AK214438:388 |
TATA-Box annotation
| Distance to TSS: | -23 |
|---|---|
| Nearest PromoterID: | NM_139297 |
| Entrez ID: | 216558 |
| Nearest Unigene: | Mm.28877 |
| Nearest Refseq: | NM_139297 |
| Nearest Ensembl: | ENSMUSG00000001891 |
| Gene Name: | UDP-glucose pyrophosphorylase 2 |
| Gene Alias: | UDPGP|UGPase |
| Gene Description: | UDP-glucose pyrophosphorylase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -64(GGCTATTTATGG,-,0.00),-62(CTATTTATGGGC,+,0.00) |
