Difference between revisions of "TSS:Mm 101285.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000102874.10:1 ENSMUST00000125302.1:-156 | + | |all_trans=ENSMUST00000102874.10:1 ENSMUST00000238916.1:1 ENSMUST00000125302.1:-156 ENSMUST00000239073.1:260 NM_008618:260 NM_001316675:260 AK005237:364 AK046369:376 AK077724:378 AK164785:380 M29462:381 AK002395:382 AK008270:388 BC050940:394 AK002404:402 AK168545:423 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| Line 9: | Line 9: | ||
|entrez_id=216560 | |entrez_id=216560 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
| − | |gene_alias=AV249152 | + | |gene_alias=AV249152{{!}}Frtz{{!}}homolog-13 |
|gene_description=WD repeat containing planar cell polarity effector | |gene_description=WD repeat containing planar cell polarity effector | ||
|gene_id=17449 | |gene_id=17449 | ||
| − | |gene_name= | + | |gene_name=malate dehydrogenase 1, NAD (soluble) |
|gene_source=MGI:97051 | |gene_source=MGI:97051 | ||
|gene_symbol=Mdh1 | |gene_symbol=Mdh1 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:97051 | |hgnc_mgi_id=MGI:97051 | ||
|nearest_ensembl=ENSMUSG00000020319 | |nearest_ensembl=ENSMUSG00000020319 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001364768 |
|nearest_refseq=NM_145425 | |nearest_refseq=NM_145425 | ||
|nearest_unigene=Mm.138090 | |nearest_unigene=Mm.138090 | ||
| Line 27: | Line 27: | ||
|start_of_center_position=21572202 | |start_of_center_position=21572202 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-35(GTTTTTAAAAGG,-,0.00) |
| − | |transcript_name=ENSMUST00000102874.10 | + | |transcript_name=ENSMUST00000102874.10 ENSMUST00000238916.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101285.1 | |tss_id=mm_101285.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=P14152 | + | |uniprot_id=A0A5F8MPN8 P14152 |
}} | }} | ||
Revision as of 16:37, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 21572202 |
|---|---|
| End of the center position in the TSS region: | 21572203 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000102874.10 ENSMUST00000238916.1 |
|---|---|
| Distance: | 1 |
| Num_trans: | 16 |
| All_trans: | ENSMUST00000102874.10:1 ENSMUST00000238916.1:1 ENSMUST00000125302.1:-156 ENSMUST00000239073.1:260 NM_008618:260 NM_001316675:260 AK005237:364 AK046369:376 AK077724:378 AK164785:380 M29462:381 AK002395:382 AK008270:388 BC050940:394 AK002404:402 AK168545:423 |
TATA-Box annotation
| Distance to TSS: | -79 |
|---|---|
| Nearest PromoterID: | NM_001364768 |
| Entrez ID: | 216560 |
| Nearest Unigene: | Mm.138090 |
| Nearest Refseq: | NM_145425 |
| Nearest Ensembl: | ENSMUSG00000020319 |
| Gene Name: | malate dehydrogenase 1, NAD (soluble) |
| Gene Alias: | AV249152|Frtz|homolog-13 |
| Gene Description: | WD repeat containing planar cell polarity effector |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(GTTTTTAAAAGG,-,0.00) |
