Difference between revisions of "TSS:Mm 101327.1"
From referenceTSS
| Line 4: | Line 4: | ||
|U2af1-rs1= | |U2af1-rs1= | ||
|U2afbp-rs= | |U2afbp-rs= | ||
| − | |all_trans=ENSMUST00000162924.1:0 | + | |all_trans=ENSMUST00000162924.1:0 NM_001361661:-6 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=12 |
|end=22972860 | |end=22972860 | ||
|end_of_center_position=22972854 | |end_of_center_position=22972854 | ||
| − | |entrez_id= | + | |entrez_id=17846 |
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
| − | |gene_alias= | + | |gene_alias=AI256843{{!}}Murr1{{!}}U2/Mu |
| − | |gene_description= | + | |gene_description=COMM domain containing 1 |
|gene_id=17846 | |gene_id=17846 | ||
|gene_name=COMM domain containing 1 | |gene_name=COMM domain containing 1 | ||
| Line 22: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:109474 | |hgnc_mgi_id=MGI:109474 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSMUSG00000051355 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001361661 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_144514 |
| − | |nearest_unigene=Mm. | + | |nearest_unigene=Mm.259903 |
| − | |num_trans= | + | |num_trans=2 |
|species=mouse | |species=mouse | ||
|start=22972847 | |start=22972847 | ||
Revision as of 16:37, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 22972853 |
|---|---|
| End of the center position in the TSS region: | 22972854 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000162924.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 2 |
| All_trans: | ENSMUST00000162924.1:0 NM_001361661:-6 |
TATA-Box annotation
| Distance to TSS: | 12 |
|---|---|
| Nearest PromoterID: | NM_001361661 |
| Entrez ID: | 17846 |
| Nearest Unigene: | Mm.259903 |
| Nearest Refseq: | NM_144514 |
| Nearest Ensembl: | ENSMUSG00000051355 |
| Gene Name: | COMM domain containing 1 |
| Gene Alias: | AI256843|Murr1|U2/Mu |
| Gene Description: | COMM domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
