Difference between revisions of "TSS:Mm 101328.1"
From referenceTSS
| Line 4: | Line 4: | ||
|U2af1-rs1= | |U2af1-rs1= | ||
|U2afbp-rs= | |U2afbp-rs= | ||
| − | |all_trans=ENSMUST00000162924.1:11 | + | |all_trans=NM_001361661:4 ENSMUST00000162924.1:11 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| − | |distance= | + | |distance=4 |
| − | |distance_to_tss= | + | |distance_to_tss=-9 |
|end=22972881 | |end=22972881 | ||
|end_of_center_position=22972876 | |end_of_center_position=22972876 | ||
| − | |entrez_id= | + | |entrez_id=17846 |
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias= | + | |gene_alias=AI256843{{!}}Murr1{{!}}U2/Mu |
| − | |gene_description= | + | |gene_description=COMM domain containing 1 |
|gene_id=17846 | |gene_id=17846 | ||
|gene_name=COMM domain containing 1 | |gene_name=COMM domain containing 1 | ||
| Line 22: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:109474 | |hgnc_mgi_id=MGI:109474 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSMUSG00000051355 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001361661 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_144514 |
| − | |nearest_unigene=Mm. | + | |nearest_unigene=Mm.259903 |
| − | |num_trans= | + | |num_trans=2 |
|species=mouse | |species=mouse | ||
|start=22972869 | |start=22972869 | ||
|start_of_center_position=22972875 | |start_of_center_position=22972875 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001361661 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101328.1 | |tss_id=mm_101328.1 | ||
Revision as of 16:37, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 22972875 |
|---|---|
| End of the center position in the TSS region: | 22972876 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001361661 |
|---|---|
| Distance: | 4 |
| Num_trans: | 2 |
| All_trans: | NM_001361661:4 ENSMUST00000162924.1:11 |
TATA-Box annotation
| Distance to TSS: | -9 |
|---|---|
| Nearest PromoterID: | NM_001361661 |
| Entrez ID: | 17846 |
| Nearest Unigene: | Mm.259903 |
| Nearest Refseq: | NM_144514 |
| Nearest Ensembl: | ENSMUSG00000051355 |
| Gene Name: | COMM domain containing 1 |
| Gene Alias: | AI256843|Murr1|U2/Mu |
| Gene Description: | COMM domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
