Difference between revisions of "TSS:Mm 101330.1"
From referenceTSS
| Line 2: | Line 2: | ||
|Murr1= | |Murr1= | ||
|U2/Mu= | |U2/Mu= | ||
| − | |all_trans=NM_144514 | + | |all_trans=NM_144514:0 AK133507:0 AK082909:0 BC132083:0 BC132085:0 AB104816:0 ENSMUST00000071068.8:1 BC051210:13 D85430:15 BC038641:22 ENSMUST00000093270.5:69 BC030052:69 ENSMUST00000159081.7:-91 AK147766:132 ENSMUST00000160826.1:163 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| Line 11: | Line 11: | ||
|entrez_id=17846 | |entrez_id=17846 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
| − | |gene_alias=AI256843 | + | |gene_alias=AI256843{{!}}Murr1{{!}}U2/Mu |
|gene_description=COMM domain containing 1 | |gene_description=COMM domain containing 1 | ||
|gene_id=17846 | |gene_id=17846 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_144514 | |nearest_refseq=NM_144514 | ||
|nearest_unigene=Mm.259903 | |nearest_unigene=Mm.259903 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=mouse | |species=mouse | ||
|start=22982252 | |start=22982252 | ||
|start_of_center_position=22982271 | |start_of_center_position=22982271 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-54(GCTTTTATGGCC,+,0.00) |
| − | |transcript_name=NM_144514 | + | |transcript_name=NM_144514 AK133507 AK082909 BC132083 BC132085 AB104816 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101330.1 | |tss_id=mm_101330.1 | ||
Revision as of 16:38, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 22982271 |
|---|---|
| End of the center position in the TSS region: | 22982272 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_144514 AK133507 AK082909 BC132083 BC132085 AB104816 |
|---|---|
| Distance: | 0 |
| Num_trans: | 15 |
| All_trans: | NM_144514:0 AK133507:0 AK082909:0 BC132083:0 BC132085:0 AB104816:0 ENSMUST00000071068.8:1 BC051210:13 D85430:15 BC038641:22 ENSMUST00000093270.5:69 BC030052:69 ENSMUST00000159081.7:-91 AK147766:132 ENSMUST00000160826.1:163 |
TATA-Box annotation
| Distance to TSS: | 12 |
|---|---|
| Nearest PromoterID: | NM_144514 |
| Entrez ID: | 17846 |
| Nearest Unigene: | Mm.259903 |
| Nearest Refseq: | NM_144514 |
| Nearest Ensembl: | ENSMUSG00000051355 |
| Gene Name: | COMM domain containing 1 |
| Gene Alias: | AI256843|Murr1|U2/Mu |
| Gene Description: | COMM domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -54(GCTTTTATGGCC,+,0.00) |
