Difference between revisions of "TSS:Mm 101340.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000169264.7:170 ENSMUST00000140122. | + | |all_trans=NM_001370913:-15 ENSMUST00000169264.7:170 ENSMUST00000140122.2:170 LF226566:-347 MA462143:-347 NM_001110133:411 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=-15 |
| − | |distance_to_tss= | + | |distance_to_tss=22 |
|end=23520126 | |end=23520126 | ||
|end_of_center_position=23520119 | |end_of_center_position=23520119 | ||
|entrez_id=67358 | |entrez_id=67358 | ||
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
| − | |gene_alias= | + | |gene_alias=b2b3025Clo |
|gene_description=RIKEN cDNA 1700093K21 gene | |gene_description=RIKEN cDNA 1700093K21 gene | ||
|gene_id=67358 | |gene_id=67358 | ||
| Line 15: | Line 15: | ||
|gene_source=MGI:1914608 | |gene_source=MGI:1914608 | ||
|gene_symbol=1700093K21Rik | |gene_symbol=1700093K21Rik | ||
| − | |gene_synonyms= | + | |gene_synonyms=b2b3025Clo |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:1914608 | |hgnc_mgi_id=MGI:1914608 | ||
|nearest_ensembl=ENSMUSG00000020286 | |nearest_ensembl=ENSMUSG00000020286 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001370913 |
|nearest_refseq=NM_026105 | |nearest_refseq=NM_026105 | ||
|nearest_unigene=Mm.87328 | |nearest_unigene=Mm.87328 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=mouse | |species=mouse | ||
|start=23520111 | |start=23520111 | ||
|start_of_center_position=23520118 | |start_of_center_position=23520118 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001370913 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_101340.1 | |tss_id=mm_101340.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 16:38, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 23520118 |
|---|---|
| End of the center position in the TSS region: | 23520119 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001370913 |
|---|---|
| Distance: | -15 |
| Num_trans: | 6 |
| All_trans: | NM_001370913:-15 ENSMUST00000169264.7:170 ENSMUST00000140122.2:170 LF226566:-347 MA462143:-347 NM_001110133:411 |
TATA-Box annotation
| Distance to TSS: | 22 |
|---|---|
| Nearest PromoterID: | NM_001370913 |
| Entrez ID: | 67358 |
| Nearest Unigene: | Mm.87328 |
| Nearest Refseq: | NM_026105 |
| Nearest Ensembl: | ENSMUSG00000020286 |
| Gene Name: | RIKEN cDNA 1700093K21 gene |
| Gene Alias: | b2b3025Clo |
| Gene Description: | RIKEN cDNA 1700093K21 gene |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
