Difference between revisions of "TSS:Mm 101346.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000180260.7:0 ENSMUST00000141353.7:0 ENSMUST00000131612.1:0 | + | |all_trans=ENSMUST00000180260.7:0 ENSMUST00000141353.7:0 ENSMUST00000131612.1:0 NR_156450:0 NM_001347242:0 NM_027860:0 AK053838:0 ENSMUST00000109532.8:-1 BC072622:1 BC079876:5 AK129454:24 BC055049:24 ENSMUST00000155903.7:73 AK029538:73 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
| Line 9: | Line 9: | ||
|entrez_id=71675 | |entrez_id=71675 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
| − | |gene_alias=Kiaa1841 | + | |gene_alias=Kiaa1841{{!}}mKIAA1841 |
|gene_description=RIKEN cDNA 0610010F05 gene | |gene_description=RIKEN cDNA 0610010F05 gene | ||
|gene_id=71675 | |gene_id=71675 | ||
| Line 20: | Line 20: | ||
|mKIAA1841= | |mKIAA1841= | ||
|nearest_ensembl=ENSMUSG00000042208 | |nearest_ensembl=ENSMUSG00000042208 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_027860 |
|nearest_refseq=NM_027860 | |nearest_refseq=NM_027860 | ||
|nearest_unigene=Mm.48031 | |nearest_unigene=Mm.48031 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=mouse | |species=mouse | ||
|start=23633621 | |start=23633621 | ||
|start_of_center_position=23633629 | |start_of_center_position=23633629 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000180260.7 ENSMUST00000141353.7 ENSMUST00000131612.1 NM_027860 | + | |transcript_name=ENSMUST00000180260.7 ENSMUST00000141353.7 ENSMUST00000131612.1 NR_156450 NM_001347242 NM_027860 AK053838 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101346.1 | |tss_id=mm_101346.1 | ||
Revision as of 16:38, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 23633629 |
|---|---|
| End of the center position in the TSS region: | 23633630 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000180260.7 ENSMUST00000141353.7 ENSMUST00000131612.1 NR_156450 NM_001347242 NM_027860 AK053838 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | ENSMUST00000180260.7:0 ENSMUST00000141353.7:0 ENSMUST00000131612.1:0 NR_156450:0 NM_001347242:0 NM_027860:0 AK053838:0 ENSMUST00000109532.8:-1 BC072622:1 BC079876:5 AK129454:24 BC055049:24 ENSMUST00000155903.7:73 AK029538:73 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_027860 |
| Entrez ID: | 71675 |
| Nearest Unigene: | Mm.48031 |
| Nearest Refseq: | NM_027860 |
| Nearest Ensembl: | ENSMUSG00000042208 |
| Gene Name: | RIKEN cDNA 0610010F05 gene |
| Gene Alias: | Kiaa1841|mKIAA1841 |
| Gene Description: | RIKEN cDNA 0610010F05 gene |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
