Difference between revisions of "TSS:Mm 101402.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|AI447698= | |AI447698= | ||
| − | |all_trans=ENSMUST00000078362.12:0 ENSMUST00000155728.7 | + | |all_trans=ENSMUST00000078362.12:0 ENSMUST00000155728.7:0 NM_001252447:0 NM_027260:0 AK089825:0 ENSMUST00000156264.1:-56 AK154485:288 ENSMUST00000124294.7:294 AK053297:294 AK012664:305 ENSMUST00000125545.1:313 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| Line 10: | Line 10: | ||
|entrez_id=69922 | |entrez_id=69922 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
| − | |gene_alias=2810003O05Rik | + | |gene_alias=2810003O05Rik{{!}}AI447698 |
|gene_description=vaccinia related kinase 2 | |gene_description=vaccinia related kinase 2 | ||
|gene_id=69922 | |gene_id=69922 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=MGI:1917172 | |hgnc_mgi_id=MGI:1917172 | ||
|nearest_ensembl=ENSMUSG00000064090 | |nearest_ensembl=ENSMUSG00000064090 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_027260 |
|nearest_refseq=NM_027260 | |nearest_refseq=NM_027260 | ||
|nearest_unigene=Mm.285351 | |nearest_unigene=Mm.285351 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=mouse | |species=mouse | ||
|start=26593915 | |start=26593915 | ||
|start_of_center_position=26593929 | |start_of_center_position=26593929 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000078362.12 ENSMUST00000155728.7 NM_027260 | + | |transcript_name=ENSMUST00000078362.12 ENSMUST00000155728.7 NM_001252447 NM_027260 AK089825 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101402.1 | |tss_id=mm_101402.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q8BN21 | + | |uniprot_id=Q8BN21 |
}} | }} | ||
Revision as of 16:39, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 26593929 |
|---|---|
| End of the center position in the TSS region: | 26593930 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000078362.12 ENSMUST00000155728.7 NM_001252447 NM_027260 AK089825 |
|---|---|
| Distance: | 0 |
| Num_trans: | 11 |
| All_trans: | ENSMUST00000078362.12:0 ENSMUST00000155728.7:0 NM_001252447:0 NM_027260:0 AK089825:0 ENSMUST00000156264.1:-56 AK154485:288 ENSMUST00000124294.7:294 AK053297:294 AK012664:305 ENSMUST00000125545.1:313 |
TATA-Box annotation
| Distance to TSS: | -9 |
|---|---|
| Nearest PromoterID: | NM_027260 |
| Entrez ID: | 69922 |
| Nearest Unigene: | Mm.285351 |
| Nearest Refseq: | NM_027260 |
| Nearest Ensembl: | ENSMUSG00000064090 |
| Gene Name: | vaccinia related kinase 2 |
| Gene Alias: | 2810003O05Rik|AI447698 |
| Gene Description: | vaccinia related kinase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
