Difference between revisions of "TSS:Mm 101411.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000146385.8:80 ENSMUST00000109501.1:-161 AK087049:-161 AK087070:-161 ENSMUST00000093253.9:-191 ENSMUST00000109502.8:-191 AK045568:-191 ENSMUST00000042534.14 | + | |all_trans=ENSMUST00000146385.8:80 ENSMUST00000109501.1:-161 AK087049:-161 AK087070:-161 ENSMUST00000093253.9:-191 ENSMUST00000109502.8:-191 AK045568:-191 ENSMUST00000042534.14:-219 NM_001166661:-219 NM_181577:-219 NM_001346759:-219 AK173298:-219 BC066065:329 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:2445069 | |hgnc_mgi_id=MGI:2445069 | ||
|nearest_ensembl=ENSMUSG00000032878 | |nearest_ensembl=ENSMUSG00000032878 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_181577 |
|nearest_refseq=NM_181577 | |nearest_refseq=NM_181577 | ||
|nearest_unigene=Mm.93759 | |nearest_unigene=Mm.93759 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=mouse | |species=mouse | ||
|start=28584074 | |start=28584074 | ||
|start_of_center_position=28584089 | |start_of_center_position=28584089 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-42(CCTTTTCTGGGC,+,0.00) |
|transcript_name=ENSMUST00000146385.8 | |transcript_name=ENSMUST00000146385.8 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 16:39, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 28584089 |
|---|---|
| End of the center position in the TSS region: | 28584090 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000146385.8 |
|---|---|
| Distance: | 80 |
| Num_trans: | 13 |
| All_trans: | ENSMUST00000146385.8:80 ENSMUST00000109501.1:-161 AK087049:-161 AK087070:-161 ENSMUST00000093253.9:-191 ENSMUST00000109502.8:-191 AK045568:-191 ENSMUST00000042534.14:-219 NM_001166661:-219 NM_181577:-219 NM_001346759:-219 AK173298:-219 BC066065:329 |
TATA-Box annotation
| Distance to TSS: | 234 |
|---|---|
| Nearest PromoterID: | NM_181577 |
| Entrez ID: | 216613 |
| Nearest Unigene: | Mm.93759 |
| Nearest Refseq: | NM_181577 |
| Nearest Ensembl: | ENSMUSG00000032878 |
| Gene Name: | coiled-coil domain containing 85A |
| Gene Alias: | - |
| Gene Description: | coiled-coil domain containing 85A |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -42(CCTTTTCTGGGC,+,0.00) |
