Difference between revisions of "TSS:Mm 101413.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000093253.9:0 ENSMUST00000109502.8:0 ENSMUST00000109501.1:0 AK045568:0 AK087049:0 AK087070:0 ENSMUST00000042534.14 | + | |all_trans=ENSMUST00000093253.9:0 ENSMUST00000109502.8:0 ENSMUST00000109501.1:0 AK045568:0 AK087049:0 AK087070:0 ENSMUST00000042534.14:-15 NM_001166661:-15 NM_181577:-15 NM_001346759:-15 AK173298:-15 ENSMUST00000146385.8:266 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:2445069 | |hgnc_mgi_id=MGI:2445069 | ||
|nearest_ensembl=ENSMUSG00000032878 | |nearest_ensembl=ENSMUSG00000032878 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_181577 |
|nearest_refseq=NM_181577 | |nearest_refseq=NM_181577 | ||
|nearest_unigene=Mm.93759 | |nearest_unigene=Mm.93759 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=mouse | |species=mouse | ||
|start=28584260 | |start=28584260 | ||
Revision as of 16:40, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 28584284 |
|---|---|
| End of the center position in the TSS region: | 28584285 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000093253.9 ENSMUST00000109502.8 ENSMUST00000109501.1 AK045568 AK087049 AK087070 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | ENSMUST00000093253.9:0 ENSMUST00000109502.8:0 ENSMUST00000109501.1:0 AK045568:0 AK087049:0 AK087070:0 ENSMUST00000042534.14:-15 NM_001166661:-15 NM_181577:-15 NM_001346759:-15 AK173298:-15 ENSMUST00000146385.8:266 |
TATA-Box annotation
| Distance to TSS: | 39 |
|---|---|
| Nearest PromoterID: | NM_181577 |
| Entrez ID: | 216613 |
| Nearest Unigene: | Mm.93759 |
| Nearest Refseq: | NM_181577 |
| Nearest Ensembl: | ENSMUSG00000032878 |
| Gene Name: | coiled-coil domain containing 85A |
| Gene Alias: | - |
| Gene Description: | coiled-coil domain containing 85A |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
