Difference between revisions of "TSS:Mm 101421.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=BC002108:-38 ENSMUST00000102844.3:-48 AK018706:-49 BC081446:58 BC096392:58 ENSMUST00000150739.1:-70 ENSMUST00000143418.1:-79 | + | |all_trans=BC002108:-38 ENSMUST00000102844.3:-48 AK018706:-49 BC081446:58 BC096392:58 ENSMUST00000150739.1:-70 ENSMUST00000143418.1:-79 NM_001033865:-228 NM_024277:-228 ENSMUST00000102845.10:-297 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_028504 | |nearest_refseq=NM_028504 | ||
|nearest_unigene=Mm.69388 | |nearest_unigene=Mm.69388 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=mouse | |species=mouse | ||
|start=29547803 | |start=29547803 | ||
Revision as of 16:40, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 29547807 |
|---|---|
| End of the center position in the TSS region: | 29547808 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC002108 |
|---|---|
| Distance: | -38 |
| Num_trans: | 10 |
| All_trans: | BC002108:-38 ENSMUST00000102844.3:-48 AK018706:-49 BC081446:58 BC096392:58 ENSMUST00000150739.1:-70 ENSMUST00000143418.1:-79 NM_001033865:-228 NM_024277:-228 ENSMUST00000102845.10:-297 |
TATA-Box annotation
| Distance to TSS: | -142 |
|---|---|
| Nearest PromoterID: | NM_028504 |
| Entrez ID: | 73324 |
| Nearest Unigene: | Mm.69388 |
| Nearest Refseq: | NM_028504 |
| Nearest Ensembl: | ENSMUSG00000020461 |
| Gene Name: | ribosomal protein S27A |
| Gene Alias: | 1700034F02Rik |
| Gene Description: | clathrin heavy chain linker domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
