Difference between revisions of "TSS:Mm 101433.1"
From referenceTSS
| Line 2: | Line 2: | ||
|C230094A16Rik= | |C230094A16Rik= | ||
|EMAP-6= | |EMAP-6= | ||
| − | |all_trans=BC051653:-36 BC023161:-40 BC059940:-125 AK079934:166 | + | |all_trans=LF226580:20 MA462157:20 BC051653:-36 BC023161:-40 BC059940:-125 LF226581:-163 MA462158:-163 AK079934:166 LF226582:-327 MA462159:-327 LF226579:329 MA462156:329 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=20 |
|distance_to_tss=-74287 | |distance_to_tss=-74287 | ||
|end=30100322 | |end=30100322 | ||
| Line 11: | Line 11: | ||
|entrez_id=237711 | |entrez_id=237711 | ||
|gc_percent=0.288557 | |gc_percent=0.288557 | ||
| − | |gene_alias=2900083P10Rik | + | |gene_alias=2900083P10Rik{{!}}C230094A16Rik{{!}}EMAP-6 |
|gene_description=echinoderm microtubule associated protein like 6 | |gene_description=echinoderm microtubule associated protein like 6 | ||
|gene_id=20742 | |gene_id=20742 | ||
| − | |gene_name= | + | |gene_name=Eml6 |
|gene_source=MGI:98388 | |gene_source=MGI:98388 | ||
|gene_symbol=Sptbn1 | |gene_symbol=Sptbn1 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_146016 | |nearest_refseq=NM_146016 | ||
|nearest_unigene=Mm.445271 | |nearest_unigene=Mm.445271 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=mouse | |species=mouse | ||
|start=30100318 | |start=30100318 | ||
|start_of_center_position=30100320 | |start_of_center_position=30100320 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF226580 MA462157 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_101433.1 | |tss_id=mm_101433.1 | ||
Latest revision as of 16:40, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 30100320 |
|---|---|
| End of the center position in the TSS region: | 30100321 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF226580 MA462157 |
|---|---|
| Distance: | 20 |
| Num_trans: | 12 |
| All_trans: | LF226580:20 MA462157:20 BC051653:-36 BC023161:-40 BC059940:-125 LF226581:-163 MA462158:-163 AK079934:166 LF226582:-327 MA462159:-327 LF226579:329 MA462156:329 |
TATA-Box annotation
| Distance to TSS: | -74287 |
|---|---|
| Nearest PromoterID: | NM_146016 |
| Entrez ID: | 237711 |
| Nearest Unigene: | Mm.445271 |
| Nearest Refseq: | NM_146016 |
| Nearest Ensembl: | ENSMUSG00000044072 |
| Gene Name: | Eml6 |
| Gene Alias: | 2900083P10Rik|C230094A16Rik|EMAP-6 |
| Gene Description: | echinoderm microtubule associated protein like 6 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.288557 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
