Difference between revisions of "TSS:Mm 101435.1"
From referenceTSS
| Line 2: | Line 2: | ||
|C230094A16Rik= | |C230094A16Rik= | ||
|EMAP-6= | |EMAP-6= | ||
| − | |all_trans=BC059940:0 BC023161:47 BC051653:51 AK079934:256 | + | |all_trans=BC059940:0 LF226581:0 MA462158:0 BC023161:47 BC051653:51 LF226580:110 MA462157:110 LF226582:-150 MA462159:-150 AK079934:256 LF226579:419 MA462156:419 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 11: | Line 11: | ||
|entrez_id=237711 | |entrez_id=237711 | ||
|gc_percent=0.373134 | |gc_percent=0.373134 | ||
| − | |gene_alias=2900083P10Rik | + | |gene_alias=2900083P10Rik{{!}}C230094A16Rik{{!}}EMAP-6 |
|gene_description=echinoderm microtubule associated protein like 6 | |gene_description=echinoderm microtubule associated protein like 6 | ||
|gene_id=20742 | |gene_id=20742 | ||
| − | |gene_name= | + | |gene_name=spectrin beta, non-erythrocytic 1 |
|gene_source=MGI:98388 | |gene_source=MGI:98388 | ||
|gene_symbol=Sptbn1 | |gene_symbol=Sptbn1 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_146016 | |nearest_refseq=NM_146016 | ||
|nearest_unigene=Mm.445271 | |nearest_unigene=Mm.445271 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=mouse | |species=mouse | ||
|start=30100408 | |start=30100408 | ||
|start_of_center_position=30100453 | |start_of_center_position=30100453 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=BC059940 | + | |transcript_name=BC059940 LF226581 MA462158 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_101435.1 | |tss_id=mm_101435.1 | ||
Revision as of 16:40, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 30100453 |
|---|---|
| End of the center position in the TSS region: | 30100454 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC059940 LF226581 MA462158 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | BC059940:0 LF226581:0 MA462158:0 BC023161:47 BC051653:51 LF226580:110 MA462157:110 LF226582:-150 MA462159:-150 AK079934:256 LF226579:419 MA462156:419 |
TATA-Box annotation
| Distance to TSS: | -74421 |
|---|---|
| Nearest PromoterID: | NM_146016 |
| Entrez ID: | 237711 |
| Nearest Unigene: | Mm.445271 |
| Nearest Refseq: | NM_146016 |
| Nearest Ensembl: | ENSMUSG00000044072 |
| Gene Name: | spectrin beta, non-erythrocytic 1 |
| Gene Alias: | 2900083P10Rik|C230094A16Rik|EMAP-6 |
| Gene Description: | echinoderm microtubule associated protein like 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.373134 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
