Difference between revisions of "TSS:Mm 101494.1"
From referenceTSS
(Created page with "{{TSSDetail |chr=chr11 |cpg_percent=0 |distance= |distance_to_tss=3250 |end=31821311 |entrez_id=414116 |gc_percent=0.457711 |gene_alias=- |gene_description=RIKEN cDNA D630024D...") |
|||
| (One intermediate revision by the same user not shown) | |||
| Line 2: | Line 2: | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=3250 | |distance_to_tss=3250 | ||
|end=31821311 | |end=31821311 | ||
| + | |end_of_center_position=31821298 | ||
|entrez_id=414116 | |entrez_id=414116 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
| Line 12: | Line 13: | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|nearest_ensembl=ENSMUSG00000085772 | |nearest_ensembl=ENSMUSG00000085772 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_102311 |
|nearest_refseq=NR_102310 | |nearest_refseq=NR_102310 | ||
|nearest_unigene=Mm.150222 | |nearest_unigene=Mm.150222 | ||
| Line 18: | Line 19: | ||
|species=mouse | |species=mouse | ||
|start=31821283 | |start=31821283 | ||
| + | |start_of_center_position=31821297 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=45(TTCTTTATAAAG,-,0.00),47(CTTTATAAAGTA,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 16:41, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 31821297 |
|---|---|
| End of the center position in the TSS region: | 31821298 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 3250 |
|---|---|
| Nearest PromoterID: | NR_102311 |
| Entrez ID: | 414116 |
| Nearest Unigene: | Mm.150222 |
| Nearest Refseq: | NR_102310 |
| Nearest Ensembl: | ENSMUSG00000085772 |
| Gene Name: | D630024D03Rik |
| Gene Alias: | - |
| Gene Description: | RIKEN cDNA D630024D03 gene |
| Gene Type: | ncRNA |
| CpG%: | 0 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 45(TTCTTTATAAAG,-,0.00),47(CTTTATAAAGTA,+,0.00) |
