Difference between revisions of "TSS:Mm 101497.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000134944.1:0 AK085420:0 AK158233:0 | + | |all_trans=ENSMUST00000134944.1:0 AK085420:0 KY467578:0 AK158233:0 KY467577:-2 NR_102312:-12 NR_102314:-12 NR_102311:-12 NR_102310:-12 AK158188:-12 ENSMUST00000129425.7:46 ENSMUST00000126265.1:46 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:3041224 | |hgnc_mgi_id=MGI:3041224 | ||
|nearest_ensembl=ENSMUSG00000085772 | |nearest_ensembl=ENSMUSG00000085772 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_102311 |
|nearest_refseq=NR_102310 | |nearest_refseq=NR_102310 | ||
|nearest_unigene=Mm.150222 | |nearest_unigene=Mm.150222 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=mouse | |species=mouse | ||
|start=31824518 | |start=31824518 | ||
|start_of_center_position=31824526 | |start_of_center_position=31824526 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000134944.1 AK085420 AK158233 | + | |transcript_name=ENSMUST00000134944.1 AK085420 KY467578 AK158233 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101497.1 | |tss_id=mm_101497.1 | ||
Revision as of 16:42, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 31824526 |
|---|---|
| End of the center position in the TSS region: | 31824527 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000134944.1 AK085420 KY467578 AK158233 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | ENSMUST00000134944.1:0 AK085420:0 KY467578:0 AK158233:0 KY467577:-2 NR_102312:-12 NR_102314:-12 NR_102311:-12 NR_102310:-12 AK158188:-12 ENSMUST00000129425.7:46 ENSMUST00000126265.1:46 |
TATA-Box annotation
| Distance to TSS: | 20 |
|---|---|
| Nearest PromoterID: | NR_102311 |
| Entrez ID: | 414116 |
| Nearest Unigene: | Mm.150222 |
| Nearest Refseq: | NR_102310 |
| Nearest Ensembl: | ENSMUSG00000085772 |
| Gene Name: | RIKEN cDNA D630024D03 gene |
| Gene Alias: | - |
| Gene Description: | RIKEN cDNA D630024D03 gene |
| Gene Type: | ncRNA |
| CpG%: | 0.03 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
