Difference between revisions of "TSS:Mm 101498.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=NR_102312:0 NR_102314:0 NR_102311:0 NR_102310:0 AK158188:0 KY467577:5 AK158233:13 ENSMUST00000134944.1:18 AK085420:18 KY467578:18 ENSMUST00000129425.7:69 ENSMUST00000126265.1:69 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:3041224 | |hgnc_mgi_id=MGI:3041224 | ||
|nearest_ensembl=ENSMUSG00000085772 | |nearest_ensembl=ENSMUSG00000085772 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_102311 |
|nearest_refseq=NR_102310 | |nearest_refseq=NR_102310 | ||
|nearest_unigene=Mm.150222 | |nearest_unigene=Mm.150222 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=mouse | |species=mouse | ||
|start=31824541 | |start=31824541 | ||
|start_of_center_position=31824546 | |start_of_center_position=31824546 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NR_102314 | + | |transcript_name=NR_102312 NR_102314 NR_102311 NR_102310 AK158188 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101498.1 | |tss_id=mm_101498.1 | ||
Revision as of 16:42, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 31824546 |
|---|---|
| End of the center position in the TSS region: | 31824547 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NR_102312 NR_102314 NR_102311 NR_102310 AK158188 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | NR_102312:0 NR_102314:0 NR_102311:0 NR_102310:0 AK158188:0 KY467577:5 AK158233:13 ENSMUST00000134944.1:18 AK085420:18 KY467578:18 ENSMUST00000129425.7:69 ENSMUST00000126265.1:69 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NR_102311 |
| Entrez ID: | 414116 |
| Nearest Unigene: | Mm.150222 |
| Nearest Refseq: | NR_102310 |
| Nearest Ensembl: | ENSMUSG00000085772 |
| Gene Name: | RIKEN cDNA D630024D03 gene |
| Gene Alias: | - |
| Gene Description: | RIKEN cDNA D630024D03 gene |
| Gene Type: | ncRNA |
| CpG%: | 0.03 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
