Difference between revisions of "TSS:Mm 101508.1"
From referenceTSS
| Line 3: | Line 3: | ||
|Dist1= | |Dist1= | ||
|Egfr-rs= | |Egfr-rs= | ||
| − | |all_trans=ENSMUST00000020524.14:0 ENSMUST00000146179.7:0 ENSMUST00000132578.7:0 ENSMUST00000150381.1:0 ENSMUST00000144902.1:0 | + | |all_trans=ENSMUST00000020524.14:0 ENSMUST00000146179.7:0 ENSMUST00000132578.7:0 ENSMUST00000150381.1:0 ENSMUST00000144902.1:0 NM_001291818:0 NM_010117:0 LF198421:0 MA433998:0 BC027346:0 AK144437:0 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| Line 12: | Line 12: | ||
|entrez_id=13650 | |entrez_id=13650 | ||
|gc_percent=0.80597 | |gc_percent=0.80597 | ||
| − | |gene_alias=C16ORF8 | + | |gene_alias=C16ORF8{{!}}Dist{{!}}Dist1{{!}}Egfr-rs{{!}}mKIAA4242 |
|gene_description=rhomboid 5 homolog 1 | |gene_description=rhomboid 5 homolog 1 | ||
|gene_id=13650 | |gene_id=13650 | ||
| Line 31: | Line 31: | ||
|start_of_center_position=32222274 | |start_of_center_position=32222274 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000020524.14 ENSMUST00000146179.7 ENSMUST00000132578.7 ENSMUST00000150381.1 ENSMUST00000144902.1 NM_010117 | + | |transcript_name=ENSMUST00000020524.14 ENSMUST00000146179.7 ENSMUST00000132578.7 ENSMUST00000150381.1 ENSMUST00000144902.1 NM_001291818 NM_010117 LF198421 MA433998 BC027346 AK144437 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101508.1 | |tss_id=mm_101508.1 | ||
Revision as of 16:42, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 32222274 |
|---|---|
| End of the center position in the TSS region: | 32222275 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000020524.14 ENSMUST00000146179.7 ENSMUST00000132578.7 ENSMUST00000150381.1 ENSMUST00000144902.1 NM_001291818 NM_010117 LF198421 MA433998 BC027346 AK144437 |
|---|---|
| Distance: | 0 |
| Num_trans: | 11 |
| All_trans: | ENSMUST00000020524.14:0 ENSMUST00000146179.7:0 ENSMUST00000132578.7:0 ENSMUST00000150381.1:0 ENSMUST00000144902.1:0 NM_001291818:0 NM_010117:0 LF198421:0 MA433998:0 BC027346:0 AK144437:0 |
TATA-Box annotation
| Distance to TSS: | 19 |
|---|---|
| Nearest PromoterID: | NM_010117 |
| Entrez ID: | 13650 |
| Nearest Unigene: | Mm.11545 |
| Nearest Refseq: | NM_010117 |
| Nearest Ensembl: | ENSMUSG00000020282 |
| Gene Name: | rhomboid 5 homolog 1 |
| Gene Alias: | C16ORF8|Dist|Dist1|Egfr-rs|mKIAA4242 |
| Gene Description: | rhomboid 5 homolog 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.80597 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
