Difference between revisions of "TSS:Mm 101510.1"
From referenceTSS
| Line 6: | Line 6: | ||
|Phg= | |Phg= | ||
|Prox1= | |Prox1= | ||
| − | |all_trans=ENSMUST00000136903.7:0 ENSMUST00000137950.7:0 ENSMUST00000149526.1:0 ENSMUST00000129010.1:0 AK086378:0 AK154884:0 AK036405:0 AK081902:0 AK047190:0 AK039600:-5 ENSMUST00000124640.7:-12 ENSMUST00000141859.7:-12 AK090290:-12 ENSMUST00000020530.11 | + | |all_trans=ENSMUST00000136903.7:0 ENSMUST00000137950.7:0 ENSMUST00000149526.1:0 ENSMUST00000129010.1:0 AK086378:0 AK154884:0 AK036405:0 AK081902:0 AK047190:0 AK039600:-5 ENSMUST00000124640.7:-12 ENSMUST00000141859.7:-12 AK090290:-12 ENSMUST00000020530.11:-30 NM_001284359:-30 NM_001284360:-30 NR_104306:-30 NM_181569:-30 BC064471:-30 ENSMUST00000132856.1:33 ENSMUST00000109389.8:37 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| Line 15: | Line 15: | ||
|entrez_id=17168 | |entrez_id=17168 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
| − | |gene_alias=Aag | + | |gene_alias=Aag{{!}}CGTHBA{{!}}HS-26{{!}}HS-40{{!}}Mare{{!}}Phg{{!}}Prox1{{!}}m(alpha)RE |
|gene_description=nitrogen permease regulator-like 3 | |gene_description=nitrogen permease regulator-like 3 | ||
|gene_id=17168 | |gene_id=17168 | ||
| Line 26: | Line 26: | ||
|m(alpha)RE= | |m(alpha)RE= | ||
|nearest_ensembl=ENSMUSG00000020289 | |nearest_ensembl=ENSMUSG00000020289 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_104306 |
|nearest_refseq=NM_181569 | |nearest_refseq=NM_181569 | ||
|nearest_unigene=Mm.263161 | |nearest_unigene=Mm.263161 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=mouse | |species=mouse | ||
|start=32267583 | |start=32267583 | ||
Revision as of 16:42, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 32267630 |
|---|---|
| End of the center position in the TSS region: | 32267631 |
Gene and protein annotation
|
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Transcript annotation
| Transcript_name: | ENSMUST00000136903.7 ENSMUST00000137950.7 ENSMUST00000149526.1 ENSMUST00000129010.1 AK086378 AK154884 AK036405 AK081902 AK047190 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | ENSMUST00000136903.7:0 ENSMUST00000137950.7:0 ENSMUST00000149526.1:0 ENSMUST00000129010.1:0 AK086378:0 AK154884:0 AK036405:0 AK081902:0 AK047190:0 AK039600:-5 ENSMUST00000124640.7:-12 ENSMUST00000141859.7:-12 AK090290:-12 ENSMUST00000020530.11:-30 NM_001284359:-30 NM_001284360:-30 NR_104306:-30 NM_181569:-30 BC064471:-30 ENSMUST00000132856.1:33 ENSMUST00000109389.8:37 |
TATA-Box annotation
| Distance to TSS: | 77 |
|---|---|
| Nearest PromoterID: | NR_104306 |
| Entrez ID: | 17168 |
| Nearest Unigene: | Mm.263161 |
| Nearest Refseq: | NM_181569 |
| Nearest Ensembl: | ENSMUSG00000020289 |
| Gene Name: | nitrogen permease regulator-like 3 |
| Gene Alias: | Aag|CGTHBA|HS-26|HS-40|Mare|Phg|Prox1|m(alpha)RE |
| Gene Description: | nitrogen permease regulator-like 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
