Difference between revisions of "TSS:Mm 101513.1"
From referenceTSS
| Line 3: | Line 3: | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss=- | + | |distance_to_tss=-111 |
|end=32347732 | |end=32347732 | ||
|end_of_center_position=32347730 | |end_of_center_position=32347730 | ||
| Line 10: | Line 10: | ||
|fad49= | |fad49= | ||
|gc_percent=0.80597 | |gc_percent=0.80597 | ||
| − | |gene_alias=G431001E03Rik | + | |gene_alias=G431001E03Rik{{!}}TSK4{{!}}fad49 |
|gene_description=SH3 and PX domains 2B | |gene_description=SH3 and PX domains 2B | ||
|gene_name=Sh3pxd2b | |gene_name=Sh3pxd2b | ||
| Line 23: | Line 23: | ||
|start_of_center_position=32347729 | |start_of_center_position=32347729 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-35(CTGCTTAAAGGG,-,0.00),-33(GCTTAAAGGGCC,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 16:42, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 32347729 |
|---|---|
| End of the center position in the TSS region: | 32347730 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -111 |
|---|---|
| Nearest PromoterID: | NM_177364 |
| Entrez ID: | 268396 |
| Nearest Unigene: | Mm.227616 |
| Nearest Refseq: | NM_177364 |
| Nearest Ensembl: | ENSMUSG00000040711 |
| Gene Name: | Sh3pxd2b |
| Gene Alias: | G431001E03Rik|TSK4|fad49 |
| Gene Description: | SH3 and PX domains 2B |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.80597 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(CTGCTTAAAGGG,-,0.00),-33(GCTTAAAGGGCC,+,0.00) |
