Difference between revisions of "TSS:Mm 101530.1"
From referenceTSS
| Line 2: | Line 2: | ||
|NO38= | |NO38= | ||
|Npm= | |Npm= | ||
| − | |all_trans=ENSMUST00000109354.9:0 ENSMUST00000101375.4:0 GU214027:0 AK145124:0 AK153901:0 AK028253:0 AK135517:0 AK145813:0 BC089546:0 AK165860:0 AK088923:0 AK005420:0 AK005498:0 AK150164:0 ENSMUST00000093201.12:1 AK028370:2 | + | |all_trans=ENSMUST00000109354.9:0 ENSMUST00000101375.4:0 GU214027:0 AK145124:0 AK153901:0 AK028253:0 AK135517:0 AK145813:0 BC089546:0 AK165860:0 AK088923:0 AK005420:0 AK005498:0 AK150164:0 ENSMUST00000093201.12:1 AK028370:2 BC054755:14 BC090843:14 M33212:17 BC092378:32 BC085278:48 ENSMUST00000075641.9:-119 NM_008722:-119 NM_001252260:-119 NM_001252261:-119 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| Line 11: | Line 11: | ||
|entrez_id=18148 | |entrez_id=18148 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
| − | |gene_alias=B23 | + | |gene_alias=B23{{!}}NO38{{!}}Npm |
|gene_description=nucleophosmin 1 | |gene_description=nucleophosmin 1 | ||
|gene_id=18148 | |gene_id=18148 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=MGI:106184 | |hgnc_mgi_id=MGI:106184 | ||
|nearest_ensembl=ENSMUSG00000057113 | |nearest_ensembl=ENSMUSG00000057113 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001252260 |
|nearest_refseq=NM_008722 | |nearest_refseq=NM_008722 | ||
|nearest_unigene=Mm.485384 | |nearest_unigene=Mm.485384 | ||
| − | |num_trans= | + | |num_trans=25 |
|species=mouse | |species=mouse | ||
|start=33163072 | |start=33163072 | ||
Revision as of 16:42, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 33163079 |
|---|---|
| End of the center position in the TSS region: | 33163080 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000109354.9 ENSMUST00000101375.4 GU214027 AK145124 AK153901 AK028253 AK135517 AK145813 BC089546 AK165860 AK088923 AK005420 AK005498 AK150164 |
|---|---|
| Distance: | 0 |
| Num_trans: | 25 |
| All_trans: | ENSMUST00000109354.9:0 ENSMUST00000101375.4:0 GU214027:0 AK145124:0 AK153901:0 AK028253:0 AK135517:0 AK145813:0 BC089546:0 AK165860:0 AK088923:0 AK005420:0 AK005498:0 AK150164:0 ENSMUST00000093201.12:1 AK028370:2 BC054755:14 BC090843:14 M33212:17 BC092378:32 BC085278:48 ENSMUST00000075641.9:-119 NM_008722:-119 NM_001252260:-119 NM_001252261:-119 |
TATA-Box annotation
| Distance to TSS: | 126 |
|---|---|
| Nearest PromoterID: | NM_001252260 |
| Entrez ID: | 18148 |
| Nearest Unigene: | Mm.485384 |
| Nearest Refseq: | NM_008722 |
| Nearest Ensembl: | ENSMUSG00000057113 |
| Gene Name: | nucleophosmin 1 |
| Gene Alias: | B23|NO38|Npm |
| Gene Description: | nucleophosmin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
