Difference between revisions of "TSS:Mm 101553.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|Kchip1.2= | |Kchip1.2= | ||
| − | |all_trans=AY647242:-1 ENSMUST00000101368.8:-45 AY171234:-45 ENSMUST00000065970.5:-111 BC034241:-111 DQ148493:-111 AK013657:-146 AK014313:-157 AK046398:-157 ENSMUST00000109340.8 | + | |all_trans=AY647242:-1 ENSMUST00000101368.8:-45 AY171234:-45 ENSMUST00000065970.5:-111 BC034241:-111 DQ148493:-111 AK013657:-146 AK014313:-157 AK046398:-157 ENSMUST00000109340.8:-169 AK045948:-169 AB075041:191 AY050525:216 AY050526:216 DQ148495:216 NM_001190885:-270 NM_001290690:-270 NM_027398:-270 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
|distance=-1 | |distance=-1 | ||
| − | |distance_to_tss= | + | |distance_to_tss=275 |
|end=33843416 | |end=33843416 | ||
|end_of_center_position=33843411 | |end_of_center_position=33843411 | ||
|entrez_id=70357 | |entrez_id=70357 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
| − | |gene_alias=KCHIP1 | + | |gene_alias=KCHIP1{{!}}Kchip1.2 |
|gene_description=Kv channel-interacting protein 1 | |gene_description=Kv channel-interacting protein 1 | ||
|gene_id=70357 | |gene_id=70357 | ||
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|hgnc_mgi_id=MGI:1917607 | |hgnc_mgi_id=MGI:1917607 | ||
|nearest_ensembl=ENSMUSG00000053519 | |nearest_ensembl=ENSMUSG00000053519 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001190885 |
|nearest_refseq=NM_027398 | |nearest_refseq=NM_027398 | ||
|nearest_unigene=Mm.252514 | |nearest_unigene=Mm.252514 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=mouse | |species=mouse | ||
|start=33843405 | |start=33843405 | ||
Revision as of 16:43, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 33843410 |
|---|---|
| End of the center position in the TSS region: | 33843411 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AY647242 |
|---|---|
| Distance: | -1 |
| Num_trans: | 18 |
| All_trans: | AY647242:-1 ENSMUST00000101368.8:-45 AY171234:-45 ENSMUST00000065970.5:-111 BC034241:-111 DQ148493:-111 AK013657:-146 AK014313:-157 AK046398:-157 ENSMUST00000109340.8:-169 AK045948:-169 AB075041:191 AY050525:216 AY050526:216 DQ148495:216 NM_001190885:-270 NM_001290690:-270 NM_027398:-270 |
TATA-Box annotation
| Distance to TSS: | 275 |
|---|---|
| Nearest PromoterID: | NM_001190885 |
| Entrez ID: | 70357 |
| Nearest Unigene: | Mm.252514 |
| Nearest Refseq: | NM_027398 |
| Nearest Ensembl: | ENSMUSG00000053519 |
| Gene Name: | Kv channel-interacting protein 1 |
| Gene Alias: | KCHIP1|Kchip1.2 |
| Gene Description: | Kv channel-interacting protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
