Difference between revisions of "TSS:Mm 101554.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|Kchip1.2= | |Kchip1.2= | ||
| − | |all_trans=ENSMUST00000065970.5:0 ENSMUST00000109340.8 | + | |all_trans=ENSMUST00000065970.5:0 ENSMUST00000109340.8:0 BC034241:0 DQ148493:0 AK014313:0 AK046398:0 AK045948:0 AK013657:0 NM_001190885:-57 NM_001290690:-57 NM_027398:-57 ENSMUST00000101368.8:66 AY171234:66 AY647242:110 AB075041:312 AY050525:337 AY050526:337 DQ148495:337 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=108 |
|end=33843629 | |end=33843629 | ||
|end_of_center_position=33843578 | |end_of_center_position=33843578 | ||
|entrez_id=70357 | |entrez_id=70357 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
| − | |gene_alias=KCHIP1 | + | |gene_alias=KCHIP1{{!}}Kchip1.2 |
|gene_description=Kv channel-interacting protein 1 | |gene_description=Kv channel-interacting protein 1 | ||
|gene_id=70357 | |gene_id=70357 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=MGI:1917607 | |hgnc_mgi_id=MGI:1917607 | ||
|nearest_ensembl=ENSMUSG00000053519 | |nearest_ensembl=ENSMUSG00000053519 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001190885 |
|nearest_refseq=NM_027398 | |nearest_refseq=NM_027398 | ||
|nearest_unigene=Mm.252514 | |nearest_unigene=Mm.252514 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=mouse | |species=mouse | ||
|start=33843526 | |start=33843526 | ||
|start_of_center_position=33843577 | |start_of_center_position=33843577 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000065970.5 ENSMUST00000109340.8 | + | |transcript_name=ENSMUST00000065970.5 ENSMUST00000109340.8 BC034241 DQ148493 AK014313 AK046398 AK045948 AK013657 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101554.1 | |tss_id=mm_101554.1 | ||
Revision as of 16:43, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 33843577 |
|---|---|
| End of the center position in the TSS region: | 33843578 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000065970.5 ENSMUST00000109340.8 BC034241 DQ148493 AK014313 AK046398 AK045948 AK013657 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENSMUST00000065970.5:0 ENSMUST00000109340.8:0 BC034241:0 DQ148493:0 AK014313:0 AK046398:0 AK045948:0 AK013657:0 NM_001190885:-57 NM_001290690:-57 NM_027398:-57 ENSMUST00000101368.8:66 AY171234:66 AY647242:110 AB075041:312 AY050525:337 AY050526:337 DQ148495:337 |
TATA-Box annotation
| Distance to TSS: | 108 |
|---|---|
| Nearest PromoterID: | NM_001190885 |
| Entrez ID: | 70357 |
| Nearest Unigene: | Mm.252514 |
| Nearest Refseq: | NM_027398 |
| Nearest Ensembl: | ENSMUSG00000053519 |
| Gene Name: | Kv channel-interacting protein 1 |
| Gene Alias: | KCHIP1|Kchip1.2 |
| Gene Description: | Kv channel-interacting protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
