Difference between revisions of "TSS:Mm 101556.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|Kchip1.2= | |Kchip1.2= | ||
| − | |all_trans= | + | |all_trans=NM_001190885:8 NM_001290690:8 NM_027398:8 ENSMUST00000109340.8:109 AK045948:109 AK014313:121 AK046398:121 AK013657:132 ENSMUST00000065970.5:167 BC034241:167 DQ148493:167 ENSMUST00000101368.8:233 AY171234:233 AY647242:277 AB075041:479 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| − | |distance= | + | |distance=8 |
| − | |distance_to_tss=- | + | |distance_to_tss=-17 |
|end=33843713 | |end=33843713 | ||
|end_of_center_position=33843704 | |end_of_center_position=33843704 | ||
|entrez_id=70357 | |entrez_id=70357 | ||
|gc_percent=0.751244 | |gc_percent=0.751244 | ||
| − | |gene_alias=KCHIP1 | + | |gene_alias=KCHIP1{{!}}Kchip1.2 |
|gene_description=Kv channel-interacting protein 1 | |gene_description=Kv channel-interacting protein 1 | ||
|gene_id=70357 | |gene_id=70357 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=MGI:1917607 | |hgnc_mgi_id=MGI:1917607 | ||
|nearest_ensembl=ENSMUSG00000053519 | |nearest_ensembl=ENSMUSG00000053519 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_027398 |
|nearest_refseq=NM_027398 | |nearest_refseq=NM_027398 | ||
|nearest_unigene=Mm.252514 | |nearest_unigene=Mm.252514 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=mouse | |species=mouse | ||
|start=33843693 | |start=33843693 | ||
|start_of_center_position=33843703 | |start_of_center_position=33843703 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001190885 NM_001290690 NM_027398 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101556.1 | |tss_id=mm_101556.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q9JJ57 |
}} | }} | ||
Revision as of 16:43, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 33843703 |
|---|---|
| End of the center position in the TSS region: | 33843704 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001190885 NM_001290690 NM_027398 |
|---|---|
| Distance: | 8 |
| Num_trans: | 15 |
| All_trans: | NM_001190885:8 NM_001290690:8 NM_027398:8 ENSMUST00000109340.8:109 AK045948:109 AK014313:121 AK046398:121 AK013657:132 ENSMUST00000065970.5:167 BC034241:167 DQ148493:167 ENSMUST00000101368.8:233 AY171234:233 AY647242:277 AB075041:479 |
TATA-Box annotation
| Distance to TSS: | -17 |
|---|---|
| Nearest PromoterID: | NM_027398 |
| Entrez ID: | 70357 |
| Nearest Unigene: | Mm.252514 |
| Nearest Refseq: | NM_027398 |
| Nearest Ensembl: | ENSMUSG00000053519 |
| Gene Name: | Kv channel-interacting protein 1 |
| Gene Alias: | KCHIP1|Kchip1.2 |
| Gene Description: | Kv channel-interacting protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.751244 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
