Difference between revisions of "TSS:Mm 101563.1"
From referenceTSS
| Line 3: | Line 3: | ||
|SLP-76= | |SLP-76= | ||
|SLP76= | |SLP76= | ||
| − | |all_trans=ENSMUST00000141450.1:0 | + | |all_trans=ENSMUST00000141450.1:0 ENSMUST00000223852.1:0 NR_155520:0 AK015529:0 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=6 |
|end=34098556 | |end=34098556 | ||
|end_of_center_position=34098548 | |end_of_center_position=34098548 | ||
| − | |entrez_id= | + | |entrez_id=76874 |
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
| − | |gene_alias= | + | |gene_alias=- |
| − | |gene_description= | + | |gene_description=RIKEN cDNA 4930469K13 gene |
|gene_id=76874 | |gene_id=76874 | ||
|gene_name=RIKEN cDNA 4930469K13 gene | |gene_name=RIKEN cDNA 4930469K13 gene | ||
| Line 19: | Line 19: | ||
|gene_symbol=4930469K13Rik | |gene_symbol=4930469K13Rik | ||
|gene_synonyms= | |gene_synonyms= | ||
| − | |gene_type= | + | |gene_type=ncRNA |
|hgnc_mgi_id=MGI:1924124 | |hgnc_mgi_id=MGI:1924124 | ||
|m1Khoe= | |m1Khoe= | ||
| − | |nearest_ensembl= | + | |nearest_ensembl= |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_155520 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_155520 |
| − | |nearest_unigene=Mm. | + | |nearest_unigene=Mm.437529 |
| − | |num_trans= | + | |num_trans=4 |
|species=mouse | |species=mouse | ||
|start=34098539 | |start=34098539 | ||
|start_of_center_position=34098547 | |start_of_center_position=34098547 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000141450.1 | + | |transcript_name=ENSMUST00000141450.1 ENSMUST00000223852.1 NR_155520 AK015529 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101563.1 | |tss_id=mm_101563.1 | ||
|tss_score=1 | |tss_score=1 | ||
|twm= | |twm= | ||
| − | |uniprot_id= | + | |uniprot_id=A0A286YDB2 |
}} | }} | ||
Revision as of 16:43, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 34098547 |
|---|---|
| End of the center position in the TSS region: | 34098548 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000141450.1 ENSMUST00000223852.1 NR_155520 AK015529 |
|---|---|
| Distance: | 0 |
| Num_trans: | 4 |
| All_trans: | ENSMUST00000141450.1:0 ENSMUST00000223852.1:0 NR_155520:0 AK015529:0 |
TATA-Box annotation
| Distance to TSS: | 6 |
|---|---|
| Nearest PromoterID: | NR_155520 |
| Entrez ID: | 76874 |
| Nearest Unigene: | Mm.437529 |
| Nearest Refseq: | NR_155520 |
| Nearest Ensembl: | |
| Gene Name: | RIKEN cDNA 4930469K13 gene |
| Gene Alias: | - |
| Gene Description: | RIKEN cDNA 4930469K13 gene |
| Gene Type: | ncRNA |
| CpG%: | 0.035 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
