Difference between revisions of "TSS:Mm 101603.1"
From referenceTSS
| Line 4: | Line 4: | ||
|Hch= | |Hch= | ||
|MBC= | |MBC= | ||
| − | |all_trans=ENSMUST00000093193.11:0 ENSMUST00000101365.8:0 ENSMUST00000154178.1:0 ENSMUST00000143540.7:0 AK089682:0 AK037611:0 AK089228:0 AK157336:0 NM_033374 | + | |all_trans=ENSMUST00000093193.11:0 ENSMUST00000101365.8:0 ENSMUST00000154178.1:0 ENSMUST00000143540.7:0 AK089682:0 AK037611:0 AK089228:0 AK157336:0 NM_033374:-5 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| Line 13: | Line 13: | ||
|entrez_id=94176 | |entrez_id=94176 | ||
|gc_percent=0.597015 | |gc_percent=0.597015 | ||
| − | |gene_alias=AI662014 | + | |gene_alias=AI662014{{!}}AW122239{{!}}CED-5{{!}}Hch{{!}}MBC |
|gene_description=dedicator of cyto-kinesis 2 | |gene_description=dedicator of cyto-kinesis 2 | ||
|gene_id=94176 | |gene_id=94176 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_033374 | |nearest_refseq=NM_033374 | ||
|nearest_unigene=Mm.380679 | |nearest_unigene=Mm.380679 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=mouse | |species=mouse | ||
|start=34783850 | |start=34783850 | ||
|start_of_center_position=34783875 | |start_of_center_position=34783875 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-50(GAGTTTAAAAAG,-,0.00),-48(GTTTAAAAAGAG,+,0.00) |
|transcript_name=ENSMUST00000093193.11 ENSMUST00000101365.8 ENSMUST00000154178.1 ENSMUST00000143540.7 AK089682 AK037611 AK089228 AK157336 | |transcript_name=ENSMUST00000093193.11 ENSMUST00000101365.8 ENSMUST00000154178.1 ENSMUST00000143540.7 AK089682 AK037611 AK089228 AK157336 | ||
|tss_classification=no | |tss_classification=no | ||
Revision as of 16:44, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 34783875 |
|---|---|
| End of the center position in the TSS region: | 34783876 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000093193.11 ENSMUST00000101365.8 ENSMUST00000154178.1 ENSMUST00000143540.7 AK089682 AK037611 AK089228 AK157336 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | ENSMUST00000093193.11:0 ENSMUST00000101365.8:0 ENSMUST00000154178.1:0 ENSMUST00000143540.7:0 AK089682:0 AK037611:0 AK089228:0 AK157336:0 NM_033374:-5 |
TATA-Box annotation
| Distance to TSS: | 30 |
|---|---|
| Nearest PromoterID: | NM_033374 |
| Entrez ID: | 94176 |
| Nearest Unigene: | Mm.380679 |
| Nearest Refseq: | NM_033374 |
| Nearest Ensembl: | ENSMUSG00000020143 |
| Gene Name: | dedicator of cyto-kinesis 2 |
| Gene Alias: | AI662014|AW122239|CED-5|Hch|MBC |
| Gene Description: | dedicator of cyto-kinesis 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -50(GAGTTTAAAAAG,-,0.00),-48(GTTTAAAAAGAG,+,0.00) |
