Difference between revisions of "TSS:Mm 101626.1"
From referenceTSS
| Line 3: | Line 3: | ||
|BC037006= | |BC037006= | ||
|Kibra= | |Kibra= | ||
| − | |all_trans=ENSMUST00000018993.6:65 AK220259:125 | + | |all_trans=KY442316:0 ENSMUST00000018993.6:65 NM_170779:65 AK220259:125 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss=- | + | |distance_to_tss=-73 |
|end=35980608 | |end=35980608 | ||
|end_of_center_position=35980600 | |end_of_center_position=35980600 | ||
|entrez_id=211652 | |entrez_id=211652 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
| − | |gene_alias=AA408228 | + | |gene_alias=AA408228{{!}}AU017197{{!}}BC037006{{!}}Kibra |
| − | |gene_description= | + | |gene_description=WW, C2 and coiled-coil domain containing 1 |
|gene_id=211652 | |gene_id=211652 | ||
| − | |gene_name= | + | |gene_name=WW, C2 and coiled-coil domain containing 1 |
|gene_source=MGI:2388637 | |gene_source=MGI:2388637 | ||
|gene_symbol=Wwc1 | |gene_symbol=Wwc1 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_170779 | |nearest_refseq=NM_170779 | ||
|nearest_unigene=Mm.31267 | |nearest_unigene=Mm.31267 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=mouse | |species=mouse | ||
|start=35980591 | |start=35980591 | ||
|start_of_center_position=35980599 | |start_of_center_position=35980599 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=KY442316 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101626.1 | |tss_id=mm_101626.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 16:45, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35980599 |
|---|---|
| End of the center position in the TSS region: | 35980600 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | KY442316 |
|---|---|
| Distance: | 0 |
| Num_trans: | 4 |
| All_trans: | KY442316:0 ENSMUST00000018993.6:65 NM_170779:65 AK220259:125 |
TATA-Box annotation
| Distance to TSS: | -73 |
|---|---|
| Nearest PromoterID: | NM_170779 |
| Entrez ID: | 211652 |
| Nearest Unigene: | Mm.31267 |
| Nearest Refseq: | NM_170779 |
| Nearest Ensembl: | ENSMUSG00000018849 |
| Gene Name: | WW, C2 and coiled-coil domain containing 1 |
| Gene Alias: | AA408228|AU017197|BC037006|Kibra |
| Gene Description: | WW, C2 and coiled-coil domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
