Difference between revisions of "TSS:Mm 101657.1"
From referenceTSS
| Line 3: | Line 3: | ||
|Ten-2= | |Ten-2= | ||
|Ten-m2= | |Ten-m2= | ||
| − | |all_trans=ENSMUST00000149787.7 | + | |all_trans=ENSMUST00000149787.7:-3 AK031198:-3 AK011729:-308 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| Line 12: | Line 12: | ||
|entrez_id=23964 | |entrez_id=23964 | ||
|gc_percent=0.393035 | |gc_percent=0.393035 | ||
| − | |gene_alias=Odz2 | + | |gene_alias=Odz2{{!}}Odz3{{!}}Ten-2{{!}}Ten-m2 |
|gene_description=teneurin transmembrane protein 2 | |gene_description=teneurin transmembrane protein 2 | ||
|gene_id=23964 | |gene_id=23964 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=MGI:1345184 | |hgnc_mgi_id=MGI:1345184 | ||
|nearest_ensembl=ENSMUSG00000049336 | |nearest_ensembl=ENSMUSG00000049336 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_011856 |
|nearest_refseq=NM_011856 | |nearest_refseq=NM_011856 | ||
|nearest_unigene=Mm.439889 | |nearest_unigene=Mm.439889 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=mouse | |species=mouse | ||
|start=36677731 | |start=36677731 | ||
|start_of_center_position=36677736 | |start_of_center_position=36677736 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=17(GGACTTAAAAGG,-,0.00) |
| − | |transcript_name=ENSMUST00000149787.7 | + | |transcript_name=ENSMUST00000149787.7 AK031198 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101657.1 | |tss_id=mm_101657.1 | ||
Revision as of 16:45, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 36677736 |
|---|---|
| End of the center position in the TSS region: | 36677737 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000149787.7 AK031198 |
|---|---|
| Distance: | -3 |
| Num_trans: | 3 |
| All_trans: | ENSMUST00000149787.7:-3 AK031198:-3 AK011729:-308 |
TATA-Box annotation
| Distance to TSS: | 266504 |
|---|---|
| Nearest PromoterID: | NM_011856 |
| Entrez ID: | 23964 |
| Nearest Unigene: | Mm.439889 |
| Nearest Refseq: | NM_011856 |
| Nearest Ensembl: | ENSMUSG00000049336 |
| Gene Name: | teneurin transmembrane protein 2 |
| Gene Alias: | Odz2|Odz3|Ten-2|Ten-m2 |
| Gene Description: | teneurin transmembrane protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.393035 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 17(GGACTTAAAAGG,-,0.00) |
