Difference between revisions of "TSS:Mm 101687.1"
From referenceTSS
| Line 6: | Line 6: | ||
|MATIIbeta= | |MATIIbeta= | ||
|TGR= | |TGR= | ||
| − | |all_trans=ENSMUST00000135617.1:-4 AK162087:10 AK075947:10 AK075600:45 ENSMUST00000101347.9:-220 NM_001199274:-220 | + | |all_trans=ENSMUST00000135617.1:-4 AK162087:10 AK075947:10 AK075600:45 ENSMUST00000101347.9:-220 NM_001199274:-220 LF198435:-311 MA434012:-311 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| Line 15: | Line 15: | ||
|entrez_id=108645 | |entrez_id=108645 | ||
|gc_percent=0.547264 | |gc_percent=0.547264 | ||
| − | |gene_alias=1110064C04Rik | + | |gene_alias=1110064C04Rik{{!}}2410018D16Rik{{!}}AI182287{{!}}AU022853{{!}}MAT-II{{!}}MATIIbeta{{!}}TGR |
| − | |gene_description= | + | |gene_description=methionine adenosyltransferase II, beta |
|gene_id=108645 | |gene_id=108645 | ||
| − | |gene_name= | + | |gene_name=methionine adenosyltransferase II, beta |
|gene_source=MGI:1913667 | |gene_source=MGI:1913667 | ||
|gene_symbol=Mat2b | |gene_symbol=Mat2b | ||
| Line 28: | Line 28: | ||
|nearest_refseq=NM_134017 | |nearest_refseq=NM_134017 | ||
|nearest_unigene=Mm.293771 | |nearest_unigene=Mm.293771 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=mouse | |species=mouse | ||
|start=40694950 | |start=40694950 | ||
|start_of_center_position=40694966 | |start_of_center_position=40694966 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-7(TAATTTAAAAGG,-,0.00) |
|transcript_name=ENSMUST00000135617.1 | |transcript_name=ENSMUST00000135617.1 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 16:46, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 40694966 |
|---|---|
| End of the center position in the TSS region: | 40694967 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000135617.1 |
|---|---|
| Distance: | -4 |
| Num_trans: | 8 |
| All_trans: | ENSMUST00000135617.1:-4 AK162087:10 AK075947:10 AK075600:45 ENSMUST00000101347.9:-220 NM_001199274:-220 LF198435:-311 MA434012:-311 |
TATA-Box annotation
| Distance to TSS: | 236 |
|---|---|
| Nearest PromoterID: | NM_001199274 |
| Entrez ID: | 108645 |
| Nearest Unigene: | Mm.293771 |
| Nearest Refseq: | NM_134017 |
| Nearest Ensembl: | ENSMUSG00000042032 |
| Gene Name: | methionine adenosyltransferase II, beta |
| Gene Alias: | 1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR |
| Gene Description: | methionine adenosyltransferase II, beta |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -7(TAATTTAAAAGG,-,0.00) |
