Difference between revisions of "TSS:Mm 10170.1"
From referenceTSS
| Line 6: | Line 6: | ||
|Gm13190= | |Gm13190= | ||
|OTTMUSG00000010806= | |OTTMUSG00000010806= | ||
| − | |all_trans=ENSMUST00000153160.7:48 NM_001177844 | + | |all_trans=ENSMUST00000153160.7:48 NM_001177844:48 AK077327:48 ENSMUST00000176828.7:50 AK148414:50 ENSMUST00000142452.1:69 AK029073:69 AK171532:120 AK196650:491 AK198798:491 |
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| Line 15: | Line 15: | ||
|entrez_id=209630 | |entrez_id=209630 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
| − | |gene_alias=2700017I06Rik | + | |gene_alias=2700017I06Rik{{!}}5330420J21{{!}}AI594879{{!}}C230040M21Rik{{!}}Frmd4{{!}}Gm13190{{!}}mKIAA1294 |
|gene_description=FERM domain containing 4A | |gene_description=FERM domain containing 4A | ||
|gene_id=209630 | |gene_id=209630 | ||
| Line 29: | Line 29: | ||
|nearest_refseq=NM_172475 | |nearest_refseq=NM_172475 | ||
|nearest_unigene=Mm.37932 | |nearest_unigene=Mm.37932 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=mouse | |species=mouse | ||
|start=4559701 | |start=4559701 | ||
|start_of_center_position=4559703 | |start_of_center_position=4559703 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000153160.7 NM_001177844 | + | |transcript_name=ENSMUST00000153160.7 NM_001177844 AK077327 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_10170.1 | |tss_id=mm_10170.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q3TB04 |
}} | }} | ||
Revision as of 16:46, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 4559703 |
|---|---|
| End of the center position in the TSS region: | 4559704 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000153160.7 NM_001177844 AK077327 |
|---|---|
| Distance: | 48 |
| Num_trans: | 10 |
| All_trans: | ENSMUST00000153160.7:48 NM_001177844:48 AK077327:48 ENSMUST00000176828.7:50 AK148414:50 ENSMUST00000142452.1:69 AK029073:69 AK171532:120 AK196650:491 AK198798:491 |
TATA-Box annotation
| Distance to TSS: | -50 |
|---|---|
| Nearest PromoterID: | NM_001177844 |
| Entrez ID: | 209630 |
| Nearest Unigene: | Mm.37932 |
| Nearest Refseq: | NM_172475 |
| Nearest Ensembl: | ENSMUSG00000026657 |
| Gene Name: | FERM domain containing 4A |
| Gene Alias: | 2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294 |
| Gene Description: | FERM domain containing 4A |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
