Difference between revisions of "TSS:Mm 101704.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|Gabrg-2= | |Gabrg-2= | ||
| − | |all_trans=AK047085:-12 AK136889:-40 AF233775:-51 AF233776:-51 AF233777:-51 AF233778:-51 AF233779:-51 AF233780:-51 AF233781:-51 AF233782:-51 AF233783:-51 AF233784:-51 AF233785:-51 AF233786:-51 AF233787:-51 AF233788:-51 AF233789:-51 AF233790:-51 AF233791:-51 AF233792:-51 AF233793:-51 AF233794:-51 AF233795:-51 AF233796:-51 AF233797:-51 AF233798:-51 AF233799:-51 AF233800:-51 AF233801:-51 AF233802:-51 AK141129:-75 ENSMUST00000109290.1:-77 AK049857:-77 M86572:-228 ENSMUST00000070735.9:-253 BC031762:-253 M62374:-399 AK034338:-405 | + | |all_trans=AK047085:-12 AK136889:-40 AF233775:-51 AF233776:-51 AF233777:-51 AF233778:-51 AF233779:-51 AF233780:-51 AF233781:-51 AF233782:-51 AF233783:-51 AF233784:-51 AF233785:-51 AF233786:-51 AF233787:-51 AF233788:-51 AF233789:-51 AF233790:-51 AF233791:-51 AF233792:-51 AF233793:-51 AF233794:-51 AF233795:-51 AF233796:-51 AF233797:-51 AF233798:-51 AF233799:-51 AF233800:-51 AF233801:-51 AF233802:-51 AK141129:-75 ENSMUST00000109290.1:-77 AK049857:-77 M86572:-228 ENSMUST00000070735.9:-253 BC031762:-253 M62374:-399 AK034338:-405 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
|distance=-12 | |distance=-12 | ||
| − | |distance_to_tss= | + | |distance_to_tss=583 |
|end=42000279 | |end=42000279 | ||
|end_of_center_position=42000274 | |end_of_center_position=42000274 | ||
| Line 11: | Line 11: | ||
|gamma2= | |gamma2= | ||
|gc_percent=0.492537 | |gc_percent=0.492537 | ||
| − | |gene_alias=GABAA-R | + | |gene_alias=GABAA-R{{!}}Gabrg-2{{!}}gamma2 |
| − | |gene_description= | + | |gene_description=gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 |
|gene_id=14406 | |gene_id=14406 | ||
| − | |gene_name= | + | |gene_name=gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 |
|gene_source=MGI:95623 | |gene_source=MGI:95623 | ||
|gene_symbol=Gabrg2 | |gene_symbol=Gabrg2 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=MGI:95623 | |hgnc_mgi_id=MGI:95623 | ||
|nearest_ensembl=ENSMUSG00000020436 | |nearest_ensembl=ENSMUSG00000020436 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001362655 |
|nearest_refseq=NM_008073 | |nearest_refseq=NM_008073 | ||
|nearest_unigene=Mm.5309 | |nearest_unigene=Mm.5309 | ||
| − | |num_trans= | + | |num_trans=38 |
|species=mouse | |species=mouse | ||
|start=42000268 | |start=42000268 | ||
Revision as of 16:46, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 42000273 |
|---|---|
| End of the center position in the TSS region: | 42000274 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK047085 |
|---|---|
| Distance: | -12 |
| Num_trans: | 38 |
| All_trans: | AK047085:-12 AK136889:-40 AF233775:-51 AF233776:-51 AF233777:-51 AF233778:-51 AF233779:-51 AF233780:-51 AF233781:-51 AF233782:-51 AF233783:-51 AF233784:-51 AF233785:-51 AF233786:-51 AF233787:-51 AF233788:-51 AF233789:-51 AF233790:-51 AF233791:-51 AF233792:-51 AF233793:-51 AF233794:-51 AF233795:-51 AF233796:-51 AF233797:-51 AF233798:-51 AF233799:-51 AF233800:-51 AF233801:-51 AF233802:-51 AK141129:-75 ENSMUST00000109290.1:-77 AK049857:-77 M86572:-228 ENSMUST00000070735.9:-253 BC031762:-253 M62374:-399 AK034338:-405 |
TATA-Box annotation
| Distance to TSS: | 583 |
|---|---|
| Nearest PromoterID: | NM_001362655 |
| Entrez ID: | 14406 |
| Nearest Unigene: | Mm.5309 |
| Nearest Refseq: | NM_008073 |
| Nearest Ensembl: | ENSMUSG00000020436 |
| Gene Name: | gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 |
| Gene Alias: | GABAA-R|Gabrg-2|gamma2 |
| Gene Description: | gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.492537 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
