Difference between revisions of "TSS:Mm 101705.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|Gabrg-2= | |Gabrg-2= | ||
| − | |all_trans=AK136889:0 AK047085:0 AF233775:0 AF233776:0 AF233777:0 AF233778:0 AF233779:0 AF233780:0 AF233781:0 AF233782:0 AF233783:0 AF233784:0 AF233785:0 AF233786:0 AF233787:0 AF233788:0 AF233789:0 AF233790:0 AF233791:0 AF233792:0 AF233793:0 AF233794:0 AF233795:0 AF233796:0 AF233797:0 AF233798:0 AF233799:0 AF233800:0 AF233801:0 AF233802:0 AK141129:-12 ENSMUST00000109290.1:-14 AK049857:-14 M86572:-165 ENSMUST00000070735.9:-190 BC031762:-190 M62374:-336 AK034338:-342 | + | |all_trans=AK136889:0 AK047085:0 AF233775:0 AF233776:0 AF233777:0 AF233778:0 AF233779:0 AF233780:0 AF233781:0 AF233782:0 AF233783:0 AF233784:0 AF233785:0 AF233786:0 AF233787:0 AF233788:0 AF233789:0 AF233790:0 AF233791:0 AF233792:0 AF233793:0 AF233794:0 AF233795:0 AF233796:0 AF233797:0 AF233798:0 AF233799:0 AF233800:0 AF233801:0 AF233802:0 AK141129:-12 ENSMUST00000109290.1:-14 AK049857:-14 M86572:-165 ENSMUST00000070735.9:-190 BC031762:-190 M62374:-336 AK034338:-342 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=544 |
|end=42000342 | |end=42000342 | ||
|end_of_center_position=42000314 | |end_of_center_position=42000314 | ||
| Line 11: | Line 11: | ||
|gamma2= | |gamma2= | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
| − | |gene_alias=GABAA-R | + | |gene_alias=GABAA-R{{!}}Gabrg-2{{!}}gamma2 |
| − | |gene_description= | + | |gene_description=gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 |
|gene_id=14406 | |gene_id=14406 | ||
| − | |gene_name= | + | |gene_name=gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 |
|gene_source=MGI:95623 | |gene_source=MGI:95623 | ||
|gene_symbol=Gabrg2 | |gene_symbol=Gabrg2 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=MGI:95623 | |hgnc_mgi_id=MGI:95623 | ||
|nearest_ensembl=ENSMUSG00000020436 | |nearest_ensembl=ENSMUSG00000020436 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001362655 |
|nearest_refseq=NM_008073 | |nearest_refseq=NM_008073 | ||
|nearest_unigene=Mm.5309 | |nearest_unigene=Mm.5309 | ||
| − | |num_trans= | + | |num_trans=38 |
|species=mouse | |species=mouse | ||
|start=42000284 | |start=42000284 | ||
Revision as of 16:47, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 42000313 |
|---|---|
| End of the center position in the TSS region: | 42000314 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK136889 AK047085 AF233775 AF233776 AF233777 AF233778 AF233779 AF233780 AF233781 AF233782 AF233783 AF233784 AF233785 AF233786 AF233787 AF233788 AF233789 AF233790 AF233791 AF233792 AF233793 AF233794 AF233795 AF233796 AF233797 AF233798 AF233799 AF233800 AF233801 AF233802 |
|---|---|
| Distance: | 0 |
| Num_trans: | 38 |
| All_trans: | AK136889:0 AK047085:0 AF233775:0 AF233776:0 AF233777:0 AF233778:0 AF233779:0 AF233780:0 AF233781:0 AF233782:0 AF233783:0 AF233784:0 AF233785:0 AF233786:0 AF233787:0 AF233788:0 AF233789:0 AF233790:0 AF233791:0 AF233792:0 AF233793:0 AF233794:0 AF233795:0 AF233796:0 AF233797:0 AF233798:0 AF233799:0 AF233800:0 AF233801:0 AF233802:0 AK141129:-12 ENSMUST00000109290.1:-14 AK049857:-14 M86572:-165 ENSMUST00000070735.9:-190 BC031762:-190 M62374:-336 AK034338:-342 |
TATA-Box annotation
| Distance to TSS: | 544 |
|---|---|
| Nearest PromoterID: | NM_001362655 |
| Entrez ID: | 14406 |
| Nearest Unigene: | Mm.5309 |
| Nearest Refseq: | NM_008073 |
| Nearest Ensembl: | ENSMUSG00000020436 |
| Gene Name: | gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 |
| Gene Alias: | GABAA-R|Gabrg-2|gamma2 |
| Gene Description: | gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
